Construct: ORF ccsbBroadEn_07140

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003590.1_s300c1, BRDN0000456780
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XPC (7508)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7508 XPC XPC complex subunit, DNA da... NM_004628.4 99.9% 99.8% 2061G>A;2815C>A
2 human 7508 XPC XPC complex subunit, DNA da... NM_001354729.1 99.2% 99.1% 85_86insGTGAGGAGGAGGAGGAGG;2043G>A;2797C>A
3 human 7508 XPC XPC complex subunit, DNA da... NM_001354727.2 95.9% 94.9% (many diffs)
4 human 7508 XPC XPC complex subunit, DNA da... NM_001354730.1 91.2% 91.1% 1625_1626ins246;1815G>A;2569C>A
5 human 7508 XPC XPC complex subunit, DNA da... NM_001354726.1 79.3% 79.3% 0_1ins579;1482G>A;2236C>A
6 human 7508 XPC XPC complex subunit, DNA da... NR_148950.2 72.7% (many diffs)
7 human 7508 XPC XPC complex subunit, DNA da... XR_001740256.2 71.7% (many diffs)
8 human 7508 XPC XPC complex subunit, DNA da... XR_002959580.1 70.4% (many diffs)
9 human 7508 XPC XPC complex subunit, DNA da... NR_148951.2 69.3% (many diffs)
10 human 7508 XPC XPC complex subunit, DNA da... XR_002959581.1 53.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2886
ORF length:
2820
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCGGAAACGC GCGGCCGGCG GGGAGCCGCG GGGACGCGAA CTGCGCAGCC
121AGAAATCCAA GGCCAAGAGC AAGGCCCGGC GTGAGGAGGA GGAGGAGGAT GCCTTTGAAG
181ATGAGAAACC CCCAAAGAAG AGCCTTCTCT CCAAAGTTTC ACAAGGAAAG AGGAAAAGAG
241GCTGCAGTCA TCCTGGGGGT TCAGCAGATG GTCCAGCAAA AAAGAAAGTG GCCAAGGTGA
301CTGTTAAATC TGAAAACCTC AAGGTTATAA AGGATGAAGC CCTCAGCGAT GGGGATGACC
361TCAGGGACTT TCCAAGTGAC CTCAAGAAGG CACACCATCT GAAGAGAGGG GCTACCATGA
421ATGAAGACAG CAATGAAGAA GAGGAAGAAA GTGAAAATGA TTGGGAAGAG GTTGAAGAAC
481TTAGTGAGCC TGTGCTGGGT GACGTGAGAG AAAGTACAGC CTTCTCTCGA TCTCTTCTGC
541CTGTGAAGCC AGTGGAGATA GAGATTGAAA CGCCAGAGCA GGCGAAGACA AGAGAAAGAA
601GTGAAAAGAT AAAACTGGAG TTTGAGACAT ATCTTCGGAG GGCGATGAAA CGTTTCAATA
661AAGGGGTCCA TGAGGACACA CACAAGGTTC ACCTTCTCTG CCTGCTAGCA AATGGCTTCT
721ATCGAAATAA CATCTGCAGC CAGCCAGATC TGCATGCTAT TGGCCTGTCC ATCATCCCAG
781CCCGCTTTAC CAGAGTGCTG CCTCGAGATG TGGACACCTA CTACCTCTCA AACCTGGTGA
841AGTGGTTCAT TGGAACATTT ACAGTTAATG CAGAACTTTC AGCCAGTGAA CAAGATAACC
901TGCAGACTAC ATTGGAAAGG AGATTTGCTA TTTACTCTGC TCGAGATGAT GAGGAATTGG
961TCCATATATT CTTACTGATT CTCCGGGCTC TGCAGCTCTT GACCCGGCTG GTATTGTCTC
1021TACAGCCAAT TCCTCTGAAG TCAGCAACAG CAAAGGGAAA GAAACCTTCC AAGGAAAGAT
1081TGACTGCGGA TCCAGGAGGC TCCTCAGAAA CTTCCAGCCA AGTTCTAGAA AACCACACCA
1141AACCAAAGAC CAGCAAAGGA ACCAAACAAG AGGAAACCTT TGCTAAGGGC ACCTGCAGGC
1201CAAGTGCCAA AGGGAAGAGG AACAAGGGAG GCAGAAAGAA ACGGAGCAAG CCCTCCTCCA
1261GCGAGGAAGA TGAGGGCCCA GGAGACAAGC AGGAGAAGGC AACCCAGCGA CGTCCGCATG
1321GCCGGGAGCG GCGGGTGGCC TCCAGGGTGT CTTATAAAGA GGAGAGTGGG AGTGATGAGG
1381CTGGCAGCGG CTCTGATTTT GAGCTCTCCA GTGGAGAAGC CTCTGATCCC TCTGATGAGG
1441ATTCCGAACC TGGCCCTCCA AAGCAGAGGA AAGCCCCCGC TCCTCAGAGG ACAAAGGCTG
1501GGTCCAAGAG TGCCTCCAGG ACCCATCGTG GGAGCCATCG TAAGGACCCA AGCTTGCCAG
1561CGGCATCCTC AAGCTCTTCA AGCAGTAAAA GAGGCAAGAA AATGTGCAGC GATGGTGAGA
1621AGGCAGAAAA AAGAAGCATA GCTGGTATAG ACCAGTGGCT AGAGGTGTTC TGTGAGCAGG
1681AGGAAAAGTG GGTATGTGTA GACTGTGTGC ACGGTGTGGT GGGCCAGCCT CTGACCTGTT
1741ACAAGTACGC CACCAAGCCC ATGACCTATG TGGTGGGCAT TGACAGTGAC GGCTGGGTCC
1801GAGATGTCAC ACAGAGGTAC GACCCAGTCT GGATGACAGT GACCCGCAAG TGCCGGGTTG
1861ATGCTGAGTG GTGGGCCGAG ACCTTGAGAC CATACCAGAG CCCATTTATG GACAGGGAGA
1921AGAAAGAAGA CTTGGAGTTT CAGGCAAAAC ACATGGACCA GCCTTTGCCC ACTGCCATTG
1981GCTTATATAA GAACCACCCT CTGTATGCCC TGAAGCGGCA TCTCCTGAAA TATGAGGCCA
2041TCTATCCCGA GACAGCTGCC ATCCTTGGGT ATTGTCGTGG AGAAGCGGTC TACTCCAGGG
2101ATTGTGTGCA CACTCTGCAT TCCAGAGACA CGTGGCTGAA GAAAGCAAGA GTGGTGAGGC
2161TTGGAGAAGT ACCCTACAAG ATGGTGAAAG GCTTTTCTAA CCGTGCTCGG AAAGCCCGAC
2221TTGCTGAGCC CCAGCTGCGG GAAGAAAATG ACCTGGGCCT GTTTGGCTAC TGGCAGACAG
2281AGGAGTATCA GCCCCCAGTG GCCGTGGACG GGAAGGTGCC CCGGAACGAG TTTGGGAATG
2341TGTACCTCTT CCTGCCCAGC ATGATGCCTA TTGGCTGTGT CCAGCTGAAC CTGCCCAATC
2401TACACCGCGT GGCCCGCAAG CTGGACATCG ACTGTGTCCA GGCCATCACT GGCTTTGATT
2461TCCATGGCGG CTACTCCCAT CCCGTGACTG ATGGATACAT CGTCTGCGAG GAATTCAAAG
2521ACGTGCTCCT GACTGCCTGG GAAAATGAGC AGGCAGTCAT TGAAAGGAAG GAGAAGGAGA
2581AAAAGGAGAA GCGGGCTCTA GGGAACTGGA AGTTGCTGGC CAAAGGTCTG CTCATCAGGG
2641AGAGGCTGAA GCGTCGCTAC GGGCCCAAGA GTGAGGCAGC AGCTCCCCAC ACAGATGCAG
2701GAGGTGGACT CTCTTCTGAT GAAGAGGAGG GGACCAGCTC TCAAGCAGAA GCGGCCAGGA
2761TACTGGCTGC CTCCTGGCCT CAAAACCGAG AAGATGAAGA AAAGCAGAAG CTGAAGGGTG
2821GGCCCAAGAA GACCAAAAGG GAAAAGAAAG CAGCAGCTTC CCACCTGTTC CCATTTGAGA
2881AGCTGTGCCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
2941gttgcaacga ac

Download FASTA (ORF) (Full)