Construct: ORF ccsbBroadEn_07195
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002164.1_s300c1, BRDN0000456442
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC6 (8030)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8030 | CCDC6 | coiled-coil domain containi... | NM_005436.5 | 99.7% | 99.7% | 297G>T;1326G>A;1408C>A |
| 2 | mouse | 76551 | Ccdc6 | coiled-coil domain containi... | NM_001111121.1 | 85.8% | 94.7% | (many diffs) |
| 3 | mouse | 76551 | Ccdc6 | coiled-coil domain containi... | XM_006514276.3 | 75.9% | 84.2% | (many diffs) |
| 4 | mouse | 76551 | Ccdc6 | coiled-coil domain containi... | XM_006514277.2 | 68.7% | 76.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1491
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGACAGC GCCAGCGAGA GCGACACGGA CGGGGCGGGG GGCAACAGCA 121 GCAGCTCGGC CGCCATGCAG TCGTCCTGCT CGTCGACCTC GGGCGGCGGC GGTGGCGGCG 181 GGGGAGGCGG CGGCGGTGGG AAGTCGGGGG GCATTGTCAT CTCGCCGTTC CGCCTGGAGG 241 AGCTCACCAA CCGCCTGGCC TCGCTGCAGC AAGAGAACAA GGTGCTGAAG ATAGAGCTGG 301 AGACCTACAA ACTGAAGTGC AAGGCACTGC AGGAGGAGAA CCGCGACCTG CGCAAAGCCA 361 GCGTTACCAT CCAAGCCAGG GCTGAGCAGG AAGAAGAATT CATTAGTAAC ACTTTATTCA 421 AGAAAATTCA GGCTTTGCAG AAGGAGAAAG AAACCCTTGC TGTAAATTAT GAGAAAGAAG 481 AAGAATTCCT CACTAATGAG CTCTCCAGAA AATTGATGCA GTTGCAGCAT GAGAAAGCCG 541 AACTAGAACA GCATCTTGAA CAAGAGCAGG AATTTCAGGT CAACAAACTG ATGAAGAAAA 601 TTAAAAAACT GGAGAATGAC ACCATTTCTA AGCAACTTAC ATTAGAACAG TTGAGACGGG 661 AGAAGATTGA CCTTGAAAAT ACATTGGAAC AAGAACAAGA AGCACTAGTT AATCGCCTCT 721 GGAAAAGGAT GGATAAGCTT GAAGCTGAAA AGCGAATCCT GCAGGAAAAA TTAGACCAGC 781 CCGTCTCTGC TCCACCATCG CCTAGAGATA TCTCCATGGA GATTGATTCT CCAGAAAATA 841 TGATGCGTCA CATCAGGTTT TTAAAGAATG AAGTGGAACG GCTGAAGAAG CAACTGAGAG 901 CTGCTCAGTT ACAGCATTCA GAGAAAATGG CACAGTATCT GGAGGAGGAA CGTCACATGA 961 GAGAAGAGAA CTTGAGGCTC CAGAGGAAGC TGCAGAGGGA GATGGAGAGA AGAGAAGCCC 1021 TCTGTCGACA GCTCTCCGAG AGTGAGTCCA GCTTAGAAAT GGACGACGAA AGGTATTTTA 1081 ATGAGATGTC TGCACAAGGA TTAAGACCTC GCACTGTGTC CAGCCCGATC CCTTACACAC 1141 CTTCTCCGAG TTCAAGCAGG CCTATATCAC CTGGTCTATC ATATGCAAGT CACACGGTTG 1201 GTTTCACGCC ACCAACTTCA CTGACTAGAG CTGGAATGTC TTATTACAAT TCCCCGGGTC 1261 TTCACGTGCA GCACATGGGA ACATCCCATG GTATCACAAG GCCTTCACCA CGGAGAAGCA 1321 ACAGTCCTGA CAAATTCAAA CGGCCCACGC CGCCTCCATC TCCCAACACA CAGACCCCAG 1381 TCCAGCCACC TCCACCTCCA CCTCCGCCAC CCATGCAGCC CACGGTCCCC TCAGCAGCCA 1441 CCTCGCAGCC TACTCCTTCG CAACATTCGG CGCACACCTC CTCCCAGCCT TTGCCAACTT 1501 TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac