Construct: ORF ccsbBroadEn_07195

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002164.1_s300c1, BRDN0000456442
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC6 (8030)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8030 CCDC6 coiled-coil domain containi... NM_005436.5 99.7% 99.7% 297G>T;1326G>A;1408C>A
2 mouse 76551 Ccdc6 coiled-coil domain containi... NM_001111121.1 85.8% 94.7% (many diffs)
3 mouse 76551 Ccdc6 coiled-coil domain containi... XM_006514276.3 75.9% 84.2% (many diffs)
4 mouse 76551 Ccdc6 coiled-coil domain containi... XM_006514277.2 68.7% 76.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1491
ORF length:
1422
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGACAGC GCCAGCGAGA GCGACACGGA CGGGGCGGGG GGCAACAGCA
121GCAGCTCGGC CGCCATGCAG TCGTCCTGCT CGTCGACCTC GGGCGGCGGC GGTGGCGGCG
181GGGGAGGCGG CGGCGGTGGG AAGTCGGGGG GCATTGTCAT CTCGCCGTTC CGCCTGGAGG
241AGCTCACCAA CCGCCTGGCC TCGCTGCAGC AAGAGAACAA GGTGCTGAAG ATAGAGCTGG
301AGACCTACAA ACTGAAGTGC AAGGCACTGC AGGAGGAGAA CCGCGACCTG CGCAAAGCCA
361GCGTTACCAT CCAAGCCAGG GCTGAGCAGG AAGAAGAATT CATTAGTAAC ACTTTATTCA
421AGAAAATTCA GGCTTTGCAG AAGGAGAAAG AAACCCTTGC TGTAAATTAT GAGAAAGAAG
481AAGAATTCCT CACTAATGAG CTCTCCAGAA AATTGATGCA GTTGCAGCAT GAGAAAGCCG
541AACTAGAACA GCATCTTGAA CAAGAGCAGG AATTTCAGGT CAACAAACTG ATGAAGAAAA
601TTAAAAAACT GGAGAATGAC ACCATTTCTA AGCAACTTAC ATTAGAACAG TTGAGACGGG
661AGAAGATTGA CCTTGAAAAT ACATTGGAAC AAGAACAAGA AGCACTAGTT AATCGCCTCT
721GGAAAAGGAT GGATAAGCTT GAAGCTGAAA AGCGAATCCT GCAGGAAAAA TTAGACCAGC
781CCGTCTCTGC TCCACCATCG CCTAGAGATA TCTCCATGGA GATTGATTCT CCAGAAAATA
841TGATGCGTCA CATCAGGTTT TTAAAGAATG AAGTGGAACG GCTGAAGAAG CAACTGAGAG
901CTGCTCAGTT ACAGCATTCA GAGAAAATGG CACAGTATCT GGAGGAGGAA CGTCACATGA
961GAGAAGAGAA CTTGAGGCTC CAGAGGAAGC TGCAGAGGGA GATGGAGAGA AGAGAAGCCC
1021TCTGTCGACA GCTCTCCGAG AGTGAGTCCA GCTTAGAAAT GGACGACGAA AGGTATTTTA
1081ATGAGATGTC TGCACAAGGA TTAAGACCTC GCACTGTGTC CAGCCCGATC CCTTACACAC
1141CTTCTCCGAG TTCAAGCAGG CCTATATCAC CTGGTCTATC ATATGCAAGT CACACGGTTG
1201GTTTCACGCC ACCAACTTCA CTGACTAGAG CTGGAATGTC TTATTACAAT TCCCCGGGTC
1261TTCACGTGCA GCACATGGGA ACATCCCATG GTATCACAAG GCCTTCACCA CGGAGAAGCA
1321ACAGTCCTGA CAAATTCAAA CGGCCCACGC CGCCTCCATC TCCCAACACA CAGACCCCAG
1381TCCAGCCACC TCCACCTCCA CCTCCGCCAC CCATGCAGCC CACGGTCCCC TCAGCAGCCA
1441CCTCGCAGCC TACTCCTTCG CAACATTCGG CGCACACCTC CTCCCAGCCT TTGCCAACTT
1501TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)