Construct: ORF ccsbBroadEn_07348

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010261.1_s300c1, BRDN0000389554
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSTPIP1 (9051)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9051 PSTPIP1 proline-serine-threonine ph... NM_003978.5 99.9% 99.7% 6G>A
2 human 9051 PSTPIP1 proline-serine-threonine ph... NM_001321136.2 97.8% 97.1% 3_4insATACCCCAGCTGCA;8_9insAAGATGCCTTTTG
3 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522168.3 95.5% 95.4% 6G>A;353_409del
4 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522163.2 94.8% 94.7% 6G>A;353_409del;1041_1042insGCGTCCACA
5 human 9051 PSTPIP1 proline-serine-threonine ph... NM_001321135.2 94.4% 93.2% (many diffs)
6 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522164.1 87.8% 87.8% 0_1ins102;251_307del
7 human 9051 PSTPIP1 proline-serine-threonine ph... NM_001321137.1 86.4% 86.2% 1_195del;201G>A
8 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522165.2 79.8% 79.3% (many diffs)
9 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522166.2 73.3% 68.9% (many diffs)
10 human 9051 PSTPIP1 proline-serine-threonine ph... XM_006720737.3 70.6% 70.6% 0_1ins366
11 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522167.2 68.8% 64.8% (many diffs)
12 human 9051 PSTPIP1 proline-serine-threonine ph... XR_931937.2 65.8% (many diffs)
13 human 9051 PSTPIP1 proline-serine-threonine ph... XR_931936.2 63.9% (many diffs)
14 human 9051 PSTPIP1 proline-serine-threonine ph... XM_011522169.2 60.8% 57.9% (many diffs)
15 human 9051 PSTPIP1 proline-serine-threonine ph... XR_931938.2 60.3% (many diffs)
16 human 9051 PSTPIP1 proline-serine-threonine ph... XR_931939.2 55.2% (many diffs)
17 human 9051 PSTPIP1 proline-serine-threonine ph... NR_135552.2 48.9% (many diffs)
18 mouse 19200 Pstpip1 proline-serine-threonine ph... NM_011193.3 85.1% 87.5% (many diffs)
19 mouse 19200 Pstpip1 proline-serine-threonine ph... XM_006510866.2 83.3% 85.3% (many diffs)
20 mouse 19200 Pstpip1 proline-serine-threonine ph... XM_011242677.2 82.9% 85.3% (many diffs)
21 mouse 19200 Pstpip1 proline-serine-threonine ph... XM_006510865.2 80.2% 82.1% (many diffs)
22 mouse 19200 Pstpip1 proline-serine-threonine ph... XM_006510868.2 59.2% 60.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1314
ORF length:
1248
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT ACCCCAGCTG CAGTTCAAAG ATGCCTTTTG GTGCAGGGAC TTCACAGCCC
121ACACGGGCTA CGAGGTGCTG CTGCAGCGGC TTCTGGATGG CAGGAAGATG TGCAAAGACA
181TGGAGGAGCT ACTGAGGCAG AGGGCCCAGG CGGAGGAGCG GTACGGGAAG GAGCTGGTGC
241AGATCGCACG GAAGGCAGGT GGCCAGACGG AGATCAACTC CCTGAGGGCC TCCTTTGACT
301CCTTGAAGCA GCAAATGGAG AATGTGGGCA GCTCACACAT CCAGCTGGCC CTGACCCTGC
361GTGAGGAGCT GCGGAGTCTC GAGGAGTTTC GTGAGAGGCA GAAGGAGCAG AGGAAGAAGT
421ATGAGGCCGT CATGGACCGG GTCCAGAAGA GCAAGCTGTC GCTCTACAAG AAGGCCATGG
481AGTCCAAGAA GACATACGAG CAGAAGTGCC GGGACGCGGA CGACGCGGAG CAGGCCTTCG
541AGCGCATTAG CGCCAACGGC CACCAGAAGC AGGTGGAGAA GAGTCAGAAC AAAGCCAGGC
601AGTGCAAGGA CTCGGCCACC GAGGCAGAGC GGGTATACAG GCAGAGCATT GCGCAGCTGG
661AGAAGGTCCG GGCTGAGTGG GAGCAGGAGC ACCGGACCAC CTGTGAGGCC TTTCAGCTGC
721AAGAGTTTGA CCGGCTGACC ATTCTCCGCA ACGCCCTGTG GGTGCACAGC AACCAGCTCT
781CCATGCAGTG TGTCAAGGAT GATGAGCTCT ACGAGGAAGT GCGGCTGACG CTGGAAGGCT
841GCAGCATAGA CGCCGACATC GACAGTTTCA TCCAGGCCAA GAGCACGGGC ACAGAGCCCC
901CCGCTCCGGT GCCCTACCAG AACTATTACG ATCGGGAGGT CACCCCGCTG ACCAGCAGCC
961CTGGCATACA GCCGTCCTGC GGCATGATAA AGAGGTTCTC TGGACTGCTG CACGGAAGTC
1021CCAAGACCAC TTCGTTGGCA GCTTCTGCTG CGTCCACAGA GACCCTGACC CCCACCCCCG
1081AGCGGAATGA GGGTGTCTAC ACAGCCATCG CAGTGCAGGA GATACAGGGA AACCCGGCCT
1141CACCAGCCCA GGAGTACCGG GCGCTCTACG ATTATACAGC GCAGAACCCA GATGAGCTGG
1201ACCTGTCCGC GGGAGACATC CTGGAGGTGA TCCTGGAAGG GGAGGATGGC TGGTGGACTG
1261TGGAGAGGAA CGGGCAGCGT GGCTTCGTCC CTGGTTCCTA CCTGGAGAAG CTTTGCCCAA
1321CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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