Construct: ORF ccsbBroadEn_07350

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008110.1_s300c1, BRDN0000388508
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRC1 (9055)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9055 PRC1 protein regulator of cytoki... NM_003981.4 99.8% 99.6% 282G>A;560C>A;1853T>N
2 human 9055 PRC1 protein regulator of cytoki... NM_199413.3 97.5% 97.4% (many diffs)
3 human 9055 PRC1 protein regulator of cytoki... XM_011522187.2 96.1% 93.7% (many diffs)
4 human 9055 PRC1 protein regulator of cytoki... XM_011522188.3 95.1% 91.9% (many diffs)
5 human 9055 PRC1 protein regulator of cytoki... XM_017022712.2 93.8% 93.7% (many diffs)
6 human 9055 PRC1 protein regulator of cytoki... XM_017022713.2 91.6% 91.4% (many diffs)
7 human 9055 PRC1 protein regulator of cytoki... XM_017022715.2 91.4% 91.2% (many diffs)
8 human 9055 PRC1 protein regulator of cytoki... XM_005254987.3 91.1% 90.1% (many diffs)
9 human 9055 PRC1 protein regulator of cytoki... XM_006720759.2 90.6% 90.3% (many diffs)
10 human 9055 PRC1 protein regulator of cytoki... XM_011522191.3 90.6% 90.3% (many diffs)
11 human 9055 PRC1 protein regulator of cytoki... XM_006720760.2 90.3% 90.1% (many diffs)
12 human 9055 PRC1 protein regulator of cytoki... XM_011522189.2 90.2% 87.9% (many diffs)
13 human 9055 PRC1 protein regulator of cytoki... XM_017022716.2 88.4% 88.3% (many diffs)
14 human 9055 PRC1 protein regulator of cytoki... XM_017022714.2 87.8% 85.5% (many diffs)
15 human 9055 PRC1 protein regulator of cytoki... XM_011522190.3 87.1% 84.9% (many diffs)
16 human 9055 PRC1 protein regulator of cytoki... NM_001267580.2 84.5% 83.5% (many diffs)
17 human 9055 PRC1 protein regulator of cytoki... XM_017022717.1 82.7% 81.7% (many diffs)
18 human 9055 PRC1 protein regulator of cytoki... XM_011522192.2 79.2% 77.1% (many diffs)
19 mouse 233406 Prc1 protein regulator of cytoki... XM_006540856.3 85.5% 83.8% (many diffs)
20 mouse 233406 Prc1 protein regulator of cytoki... NM_145150.3 83.3% 81.6% (many diffs)
21 mouse 233406 Prc1 protein regulator of cytoki... NM_001285997.1 83% 81.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1926
ORF length:
1860
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GAGAAGTGAG GTGCTGGCGG AGGAGTCCAT AGTATGTCTG CAGAAAGCCC
121TAAATCACCT TCGGGAAATA TGGGAGCTAA TTGGGATTCC AGAGGACCAG CGGTTACAAA
181GAACTGAGGT GGTAAAGAAG CATATCAAGG AACTCCTGGA TATGATGATT GCTGAAGAGG
241AAAGCCTGAA GGAAAGACTC ATCAAAAGCA TATCCGTCTG TCAGAAAGAG CTGAACACTC
301TGTGCAGCGA GTTACATGTT GAGCCATTTC AGGAAGAAGG AGAGACAACC ATCTTGCAAC
361TAGAAAAAGA TTTGCGCACC CAAGTGGAAT TGATGCGAAA ACAGAAAAAG GAGAGAAAAC
421AGGAACTGAA GCTACTTCAA GAGCAAGATC AAGAACTGTG CGAAATTCTT TGTATGCCCC
481ACTATGATAT TGACAGTGCC TCAGTGCCCA GCTTAGAAGA GCTGAACCAG TTCAGGCAAC
541ATGTGACAAC TTTGAGGGAA ACAAAGGCTT CTAGGCGTGA GGAGTTTGTC AGTATAAAGA
601GACAGATCAT ACTGTGTATG GAAGAATTAG ACCACACCCC AGACACAAGC TTTGAAAGAG
661ATGTGGTGTG TGAAGACGAA GATGCCTTTT GTTTGTCTTT GGAGAATATT GCAACACTAC
721AAAAGTTGCT ACGGCAGCTG GAAATGCAGA AATCACAAAA TGAAGCAGTG TGTGAGGGGC
781TGCGTACTCA AATCCGAGAG CTCTGGGACA GGTTGCAAAT ACCTGAAGAA GAAAGAGAAG
841CTGTGGCCAC CATTATGTCT GGGTCAAAGG CCAAGGTCCG GAAAGCGCTG CAATTAGAAG
901TGGATCGGTT GGAAGAACTG AAAATGCAAA ACATGAAGAA AGTGATTGAG GCAATTCGAG
961TGGAGCTGGT TCAGTACTGG GACCAGTGCT TTTATAGCCA GGAGCAGAGA CAAGCTTTTG
1021CCCCTTTCTG TGCTGAGGAC TACACAGAAA GTCTGCTCCA GCTCCACGAT GCTGAGATTG
1081TGCGGTTAAA AAACTACTAT GAAGTTCACA AGGAACTCTT TGAAGGTGTC CAGAAGTGGG
1141AAGAAACCTG GAGGCTTTTC TTAGAGTTTG AGAGAAAAGC TTCAGATCCA AATCGATTTA
1201CAAACCGAGG AGGAAATCTT CTAAAAGAAG AAAAACAACG AGCCAAGCTC CAGAAAATGC
1261TGCCCAAGCT GGAAGAAGAG TTGAAGGCAC GAATTGAATT GTGGGAACAG GAACATTCAA
1321AGGCATTTAT GGTGAATGGG CAGAAATTCA TGGAGTATGT GGCAGAACAA TGGGAGATGC
1381ATCGATTGGA GAAAGAGAGA GCCAAGCAGG AAAGACAACT GAAGAACAAA AAACAGACAG
1441AGACAGAGAT GCTGTATGGC AGCGCTCCTC GAACACCTAG CAAGCGGCGA GGACTGGCTC
1501CCAATACACC GGGCAAAGCA CGTAAGCTGA ACACTACCAC CATGTCCAAT GCTACGGCCA
1561ATAGTAGCAT TCGGCCTATC TTTGGAGGGA CAGTCTACCA CTCCCCCGTG TCTCGACTTC
1621CTCCTTCTGG CAGCAAGCCA GTCGCTGCTT CCACCTGTTC AGGGAAGAAA ACACCCCGTA
1681CTGGCAGGCA TGGAGCCAAC AAGGAGAACC TGGAGCTCAA CGGCAGCATC CTGAGTGGTG
1741GGTACCCTGG CTCGGCCCCC CTCCAGCGCA ACTTCAGCAT TAATTCTGTT GCCAGCACCT
1801ATTCTGAGTT TGCGAAGGAT CCGTCCCTCT CTGACAGTTC CACTGTTGGG CTTCAGCGAG
1861AACTTTCAAA GGCTTCCAAA TCTGATGCTA CTTCTGGAAT CCTCAATTCA ACCAACANCC
1921AGTCCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1981gttgcaacga ac

Download FASTA (ORF) (Full)