Construct: ORF ccsbBroadEn_07350
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008110.1_s300c1, BRDN0000388508
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRC1 (9055)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_003981.4 | 99.8% | 99.6% | 282G>A;560C>A;1853T>N |
| 2 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_199413.3 | 97.5% | 97.4% | (many diffs) |
| 3 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522187.2 | 96.1% | 93.7% | (many diffs) |
| 4 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522188.3 | 95.1% | 91.9% | (many diffs) |
| 5 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022712.2 | 93.8% | 93.7% | (many diffs) |
| 6 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022713.2 | 91.6% | 91.4% | (many diffs) |
| 7 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022715.2 | 91.4% | 91.2% | (many diffs) |
| 8 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_005254987.3 | 91.1% | 90.1% | (many diffs) |
| 9 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_006720759.2 | 90.6% | 90.3% | (many diffs) |
| 10 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522191.3 | 90.6% | 90.3% | (many diffs) |
| 11 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_006720760.2 | 90.3% | 90.1% | (many diffs) |
| 12 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522189.2 | 90.2% | 87.9% | (many diffs) |
| 13 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022716.2 | 88.4% | 88.3% | (many diffs) |
| 14 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022714.2 | 87.8% | 85.5% | (many diffs) |
| 15 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522190.3 | 87.1% | 84.9% | (many diffs) |
| 16 | human | 9055 | PRC1 | protein regulator of cytoki... | NM_001267580.2 | 84.5% | 83.5% | (many diffs) |
| 17 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_017022717.1 | 82.7% | 81.7% | (many diffs) |
| 18 | human | 9055 | PRC1 | protein regulator of cytoki... | XM_011522192.2 | 79.2% | 77.1% | (many diffs) |
| 19 | mouse | 233406 | Prc1 | protein regulator of cytoki... | XM_006540856.3 | 85.5% | 83.8% | (many diffs) |
| 20 | mouse | 233406 | Prc1 | protein regulator of cytoki... | NM_145150.3 | 83.3% | 81.6% | (many diffs) |
| 21 | mouse | 233406 | Prc1 | protein regulator of cytoki... | NM_001285997.1 | 83% | 81.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1926
- ORF length:
- 1860
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GAGAAGTGAG GTGCTGGCGG AGGAGTCCAT AGTATGTCTG CAGAAAGCCC 121 TAAATCACCT TCGGGAAATA TGGGAGCTAA TTGGGATTCC AGAGGACCAG CGGTTACAAA 181 GAACTGAGGT GGTAAAGAAG CATATCAAGG AACTCCTGGA TATGATGATT GCTGAAGAGG 241 AAAGCCTGAA GGAAAGACTC ATCAAAAGCA TATCCGTCTG TCAGAAAGAG CTGAACACTC 301 TGTGCAGCGA GTTACATGTT GAGCCATTTC AGGAAGAAGG AGAGACAACC ATCTTGCAAC 361 TAGAAAAAGA TTTGCGCACC CAAGTGGAAT TGATGCGAAA ACAGAAAAAG GAGAGAAAAC 421 AGGAACTGAA GCTACTTCAA GAGCAAGATC AAGAACTGTG CGAAATTCTT TGTATGCCCC 481 ACTATGATAT TGACAGTGCC TCAGTGCCCA GCTTAGAAGA GCTGAACCAG TTCAGGCAAC 541 ATGTGACAAC TTTGAGGGAA ACAAAGGCTT CTAGGCGTGA GGAGTTTGTC AGTATAAAGA 601 GACAGATCAT ACTGTGTATG GAAGAATTAG ACCACACCCC AGACACAAGC TTTGAAAGAG 661 ATGTGGTGTG TGAAGACGAA GATGCCTTTT GTTTGTCTTT GGAGAATATT GCAACACTAC 721 AAAAGTTGCT ACGGCAGCTG GAAATGCAGA AATCACAAAA TGAAGCAGTG TGTGAGGGGC 781 TGCGTACTCA AATCCGAGAG CTCTGGGACA GGTTGCAAAT ACCTGAAGAA GAAAGAGAAG 841 CTGTGGCCAC CATTATGTCT GGGTCAAAGG CCAAGGTCCG GAAAGCGCTG CAATTAGAAG 901 TGGATCGGTT GGAAGAACTG AAAATGCAAA ACATGAAGAA AGTGATTGAG GCAATTCGAG 961 TGGAGCTGGT TCAGTACTGG GACCAGTGCT TTTATAGCCA GGAGCAGAGA CAAGCTTTTG 1021 CCCCTTTCTG TGCTGAGGAC TACACAGAAA GTCTGCTCCA GCTCCACGAT GCTGAGATTG 1081 TGCGGTTAAA AAACTACTAT GAAGTTCACA AGGAACTCTT TGAAGGTGTC CAGAAGTGGG 1141 AAGAAACCTG GAGGCTTTTC TTAGAGTTTG AGAGAAAAGC TTCAGATCCA AATCGATTTA 1201 CAAACCGAGG AGGAAATCTT CTAAAAGAAG AAAAACAACG AGCCAAGCTC CAGAAAATGC 1261 TGCCCAAGCT GGAAGAAGAG TTGAAGGCAC GAATTGAATT GTGGGAACAG GAACATTCAA 1321 AGGCATTTAT GGTGAATGGG CAGAAATTCA TGGAGTATGT GGCAGAACAA TGGGAGATGC 1381 ATCGATTGGA GAAAGAGAGA GCCAAGCAGG AAAGACAACT GAAGAACAAA AAACAGACAG 1441 AGACAGAGAT GCTGTATGGC AGCGCTCCTC GAACACCTAG CAAGCGGCGA GGACTGGCTC 1501 CCAATACACC GGGCAAAGCA CGTAAGCTGA ACACTACCAC CATGTCCAAT GCTACGGCCA 1561 ATAGTAGCAT TCGGCCTATC TTTGGAGGGA CAGTCTACCA CTCCCCCGTG TCTCGACTTC 1621 CTCCTTCTGG CAGCAAGCCA GTCGCTGCTT CCACCTGTTC AGGGAAGAAA ACACCCCGTA 1681 CTGGCAGGCA TGGAGCCAAC AAGGAGAACC TGGAGCTCAA CGGCAGCATC CTGAGTGGTG 1741 GGTACCCTGG CTCGGCCCCC CTCCAGCGCA ACTTCAGCAT TAATTCTGTT GCCAGCACCT 1801 ATTCTGAGTT TGCGAAGGAT CCGTCCCTCT CTGACAGTTC CACTGTTGGG CTTCAGCGAG 1861 AACTTTCAAA GGCTTCCAAA TCTGATGCTA CTTCTGGAAT CCTCAATTCA ACCAACANCC 1921 AGTCCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1981 gttgcaacga ac