Construct: ORF ccsbBroadEn_07547

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010690.1_s300c1, BRDN0000457365
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRU (10076)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10076 PTPRU protein tyrosine phosphatas... NM_001195001.2 99.9% 100% 2046G>T;2565C>T
2 human 10076 PTPRU protein tyrosine phosphatas... NM_133178.4 99.7% 99.7% 2046G>T;2565C>T;2946_2954delGGTGGGCAG
3 human 10076 PTPRU protein tyrosine phosphatas... XM_006710269.2 99.3% 99.3% (many diffs)
4 human 10076 PTPRU protein tyrosine phosphatas... XM_016999994.1 99.2% 99.3% 2046G>T;2319_2348del;2595C>T
5 human 10076 PTPRU protein tyrosine phosphatas... NM_133177.4 99.1% 99.2% (many diffs)
6 human 10076 PTPRU protein tyrosine phosphatas... NM_005704.5 99% 99.1% (many diffs)
7 human 10076 PTPRU protein tyrosine phosphatas... XM_016999993.1 98.8% 98.8% (many diffs)
8 human 10076 PTPRU protein tyrosine phosphatas... XM_016999992.1 98.6% 98.6% (many diffs)
9 human 10076 PTPRU protein tyrosine phosphatas... XM_016999995.1 79.7% 79.3% (many diffs)
10 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538674.2 89% 95.3% (many diffs)
11 mouse 19273 Ptpru protein tyrosine phosphatas... NM_011214.2 88.8% 95.1% (many diffs)
12 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538673.2 88.4% 94.7% (many diffs)
13 mouse 19273 Ptpru protein tyrosine phosphatas... NM_001083119.2 88.2% 94.4% (many diffs)
14 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250215.2 87.7% 93.8% (many diffs)
15 mouse 19273 Ptpru protein tyrosine phosphatas... XM_017320082.1 87.5% 92.3% (many diffs)
16 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538672.3 87.3% 92.1% (many diffs)
17 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250213.2 87.1% 93.2% (many diffs)
18 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538670.3 86.9% 91.7% (many diffs)
19 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538668.3 86.7% 91.5% (many diffs)
20 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538667.3 86.6% 91.3% (many diffs)
21 mouse 19273 Ptpru protein tyrosine phosphatas... XM_006538666.3 86.4% 91.1% (many diffs)
22 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250214.2 86.2% 90.9% (many diffs)
23 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250212.2 86% 90.7% (many diffs)
24 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250211.2 85.8% 90.5% (many diffs)
25 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250210.2 85.6% 90.3% (many diffs)
26 mouse 19273 Ptpru protein tyrosine phosphatas... XM_011250216.1 77.7% 83% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4368
ORF length:
4299
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCCGTGCC CAGGCGCTCG TGCTGGCACT CACCTTCCAG CTCTGCGCGC
121CGGAGACCGA GACTCCGGCA GCTGGCTGCA CCTTCGAGGA GGCAAGTGAC CCAGCAGTGC
181CCTGCGAGTA CAGCCAGGCC CAGTACGATG ACTTCCAGTG GGAGCAAGTG CGAATCCACC
241CTGGCACCCG GGCACCTGCG GACCTGCCCC ACGGCTCCTA CTTGATGGTC AACACTTCCC
301AGCATGCCCC AGGCCAGCGA GCCCATGTCA TCTTCCAGAG CCTGAGCGAG AATGATACCC
361ACTGTGTGCA GTTCAGCTAC TTCCTGTACA GCCGGGACGG GCACAGCCCG GGCACCCTGG
421GCGTCTACGT GCGCGTTAAT GGGGGCCCCC TGGGCAGTGC TGTGTGGAAT ATGACTGGAT
481CCCACGGCCG TCAGTGGCAC CAGGCTGAGC TGGCTGTCAG CACTTTCTGG CCCAATGAAT
541ATCAGGTGCT GTTTGAGGCC CTCATCTCCC CAGACCGCAG GGGCTACATG GGCCTAGATG
601ACATCCTGCT TCTCAGCTAC CCCTGCGCAA AGGCCCCACA CTTCTCCCGC CTGGGCGACG
661TGGAGGTCAA CGCGGGCCAG AACGCGTCGT TCCAGTGCAT GGCCGCGGGC AGAGCGGCCG
721AGGCCGAACG CTTCCTCTTG CAACGGCAGA GCGGGGCGCT GGTGCCGGCG GCGGGCGTGC
781GGCACATCAG CCACCGGCGC TTCCTGGCCA CTTTCCCGCT GGCTGCCGTG AGCCGCGCCG
841AGCAGGACCT GTACCGCTGT GTGTCCCAGG CCCCGCGCGG CGCGGGCGTC TCTAACTTCG
901CGGAGCTCAT CGTCAAGGAG CCCCCAACTC CCATCGCGCC CCCACAGCTG CTGCGTGCTG
961GCCCCACCTA CCTCATCATC CAGCTCAACA CCAACTCCAT CATTGGCGAC GGGCCGATCG
1021TGCGCAAGGA GATTGAGTAC CGCATGGCGC GCGGGCCCTG GGCTGAGGTG CACGCCGTCA
1081GCCTGCAGAC CTACAAGCTG TGGCACCTCG ACCCCGACAC AGAGTATGAG ATCAGCGTGC
1141TGCTCACGCG TCCCGGAGAC GGCGGCACTG GCCGCCCTGG GCCACCCCTC ATCAGCCGCA
1201CCAAATGCGC AGAGCCCATG AGGGCCCCCA AAGGCCTGGC TTTTGCTGAG ATCCAGGCCC
1261GTCAGCTGAC CCTGCAGTGG GAACCACTGG GCTACAACGT GACGCGTTGC CACACCTATA
1321CTGTGTCGCT GTGCTATCAC TACACCCTGG GCAGCAGCCA CAACCAGACC ATCCGAGAGT
1381GTGTGAAGAC AGAGCAAGGT GTCAGCCGCT ACACCATCAA GAACCTGCTG CCCTATCGGA
1441ACGTTCACGT GAGGCTTGTC CTCACTAACC CTGAGGGGCG CAAAGAGGGC AAGGAGGTCA
1501CTTTCCAGAC GGATGAGGAT GTGCCCAGTG GGATTGCAGC CGAGTCCCTG ACCTTCACTC
1561CACTGGAGGA CATGATCTTC CTCAAGTGGG AGGAGCCCCA GGAGCCCAAT GGTCTCATCA
1621CCCAGTATGA GATCAGCTAC CAGAGCATCG AGTCATCAGA CCCGGCAGTG AACGTGCCAG
1681GCCCACGACG TACCATCTCC AAGCTCCGCA ATGAGACCTA CCATGTCTTC TCCAACCTGC
1741ACCCAGGCAC CACCTACCTG TTCTCCGTGC GGGCCCGCAC AGGCAAAGGC TTCGGCCAGG
1801CGGCACTCAC TGAGATAACC ACTAACATCT CTGCTCCCAG CTTTGATTAT GCCGACATGC
1861CGTCACCCCT GGGCGAGTCT GAGAACACCA TCACCGTGCT GCTGAGGCCG GCACAGGGCC
1921GCGGTGCGCC CATCAGTGTG TACCAGGTGA TTGTGGAGGA GGAGCGGGCG CGGAGGCTGC
1981GGCGGGAGCC AGGTGGACAG GACTGCTTCC CAGTGCCATT GACCTTCGAG GCGGCGCTGG
2041CCCGAGGCCT GGTGCACTAC TTCGGGGCCG AACTGGCGGC CAGCAGTCTA CCTGAGGCCA
2101TGCCCTTTAC CGTTGGTGAC AACCAGACCT ACCGAGGCTT CTGGAACCCA CCACTTGAGC
2161CTAGGAAGGC CTATCTCATC TACTTCCAGG CAGCAAGCCA CCTGAAGGGG GAGACCCGGC
2221TGAATTGCAT CCGCATTGCC AGGAAAGCTG CCTGCAAGGA AAGCAAGCGG CCCCTGGAGG
2281TGTCCCAGAG ATCGGAGGAG ATGGGGCTTA TCCTGGGCAT CTGTGCAGGG GGGCTTGCTG
2341TCCTCATCCT TCTCCTGGGT GCCATCATTG TCATCATCCG CAAAGGGAAG CCGGTGAACA
2401TGACCAAGGC CACCGTCAAC TACCGCCAGG AGAAGACACA CATGATGAGC GCCGTGGACC
2461GCAGCTTCAC AGACCAGAGC ACCCTGCAGG AGGACGAGCG GCTGGGCCTG TCCTTCATGG
2521ACACCCATGG CTACAGCACC CGGGGAGACC AGCGCAGCGG TGGGGTCACT GAGGCCAGCA
2581GCCTCCTGGG GGGCTCCCCG AGGCGTCCCT GTGGCCGGAA GGGCTCCCCA TATCACACGG
2641GGCAGCTGCA CCCTGCGGTG CGTGTCGCAG ACCTTCTGCA GCACATCAAC CAGATGAAGA
2701CGGCCGAGGG TTACGGCTTC AAGCAGGAGT ATGAGAGCTT CTTTGAAGGC TGGGACGCCA
2761CAAAGAAGAA AGACAAGGTC AAGGGCAGCC GGCAGGAGCC AATGCCTGCC TATGATCGGC
2821ACCGAGTGAA ACTGCACCCG ATGCTGGGAG ACCCCAATGC CGACTACATT AATGCCAACT
2881ACATAGATGG TTACCACAGG TCAAACCACT TCATAGCCAC TCAAGGGCCG AAGCCTGAGA
2941TGGTCTATGA CTTCTGGCGT ATGGTGTGGC AGGAGCACTG TTCCAGCATC GTCATGATCA
3001CCAAGCTGGT CGAGGTGAAA TGCTCACGGT ACTGGCCGGA GGACTCAGAC ACCTACGGGG
3061ACATCAAGAT TATGCTGGTG AAGACAGAGA CCCTGGCTGA GTATGTCGTG CGCACTTTTG
3121CCCTGGAGCG GAGAGGCTAC TCTGCCCGGC ACGAGGTCCG CCAGTTCCAC TTCACAGCGT
3181GGCCAGAGCA TGGCGTCCCC TACCATGCCA CGGGGCTGCT GGCTTTCATC CGGCGCGTGA
3241AGGCCTCCAC CCCACCTGAT GCCGGGCCCA TTGTCATCCA CTGCAGCGCG GGCACCGGCC
3301GCACAGGTTG CTATATCGTC CTGGATGTGA TGCTGGACAT GGCAGAGTGT GAGGGCGTCG
3361TGGACATTTA CAACTGTGTG AAGACTCTCT GCTCCCGGCG TGTCAACATG ATCCAGACTG
3421AGGAGCAGTA CATCTTCATT CATGATGCAA TCCTGGAGGC CTGCCTGTGT GGGGAGACCA
3481CCATCCCTGT CAGTGAGTTC AAGGCCACCT ACAAGGAGAT GATCCGCATT GATCCTCAGA
3541GTAATTCCTC CCAGCTGCGG GAAGAGTTCC AGACGCTGAA CTCGGTCACC CCGCCGCTGG
3601ACGTGGAGGA GTGCAGCATC GCCCTGTTGC CCCGGAACCG CGACAAGAAC CGCAGCATGG
3661ACGTCCTGCC GCCCGACCGC TGCCTGCCCT TCCTCATCTC CACTGATGGG GACTCCAACA
3721ACTACATTAA TGCAGCCCTG ACTGACAGCT ACACACGGAG TGCGGCCTTC ATCGTGACCC
3781TGCACCCGCT GCAGAGCACC ACGCCCGACT TCTGGCGGCT GGTCTACGAT TACGGGTGCA
3841CCTCCATCGT CATGCTCAAC CAGCTGAACC AGTCCAACTC CGCCTGGCCC TGCCTGCAGT
3901ACTGGCCAGA GCCAGGCCGG CAGCAATATG GCCTCATGGA GGTGGAGTTT ATGTCGGGCA
3961CAGCTGATGA AGACTTAGTG GCTCGAGTCT TCCGGGTGCA GAACATCTCT CGGTTGCAGG
4021AGGGGCACCT GCTGGTGCGG CACTTCCAGT TCCTGCGCTG GTCTGCATAC CGGGACACAC
4081CTGACTCCAA GAAGGCCTTC TTGCACCTGC TGGCTGAGGT GGACAAGTGG CAGGCCGAGA
4141GTGGGGATGG GCGCACCATC GTGCACTGCC TAAACGGGGG AGGACGCAGC GGCACCTTCT
4201GCGCCTGCGC CACGGTCCTG GAGATGATCC GCTGCCACAA CTTGGTGGAC GTTTTCTTTG
4261CTGCCAAAAC CCTCCGGAAC TACAAACCCA ACATGGTGGA GACCATGGAT CAGTACCACT
4321TTTGCTACGA TGTGGCCCTG GAGTACTTGG AGGGGCTGGA GTCAAGATTG CCAACTTTCT
4381TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)