Construct: ORF ccsbBroadEn_07547
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010690.1_s300c1, BRDN0000457365
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRU (10076)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10076 | PTPRU | protein tyrosine phosphatas... | NM_001195001.2 | 99.9% | 100% | 2046G>T;2565C>T |
| 2 | human | 10076 | PTPRU | protein tyrosine phosphatas... | NM_133178.4 | 99.7% | 99.7% | 2046G>T;2565C>T;2946_2954delGGTGGGCAG |
| 3 | human | 10076 | PTPRU | protein tyrosine phosphatas... | XM_006710269.2 | 99.3% | 99.3% | (many diffs) |
| 4 | human | 10076 | PTPRU | protein tyrosine phosphatas... | XM_016999994.1 | 99.2% | 99.3% | 2046G>T;2319_2348del;2595C>T |
| 5 | human | 10076 | PTPRU | protein tyrosine phosphatas... | NM_133177.4 | 99.1% | 99.2% | (many diffs) |
| 6 | human | 10076 | PTPRU | protein tyrosine phosphatas... | NM_005704.5 | 99% | 99.1% | (many diffs) |
| 7 | human | 10076 | PTPRU | protein tyrosine phosphatas... | XM_016999993.1 | 98.8% | 98.8% | (many diffs) |
| 8 | human | 10076 | PTPRU | protein tyrosine phosphatas... | XM_016999992.1 | 98.6% | 98.6% | (many diffs) |
| 9 | human | 10076 | PTPRU | protein tyrosine phosphatas... | XM_016999995.1 | 79.7% | 79.3% | (many diffs) |
| 10 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538674.2 | 89% | 95.3% | (many diffs) |
| 11 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | NM_011214.2 | 88.8% | 95.1% | (many diffs) |
| 12 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538673.2 | 88.4% | 94.7% | (many diffs) |
| 13 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | NM_001083119.2 | 88.2% | 94.4% | (many diffs) |
| 14 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250215.2 | 87.7% | 93.8% | (many diffs) |
| 15 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_017320082.1 | 87.5% | 92.3% | (many diffs) |
| 16 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538672.3 | 87.3% | 92.1% | (many diffs) |
| 17 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250213.2 | 87.1% | 93.2% | (many diffs) |
| 18 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538670.3 | 86.9% | 91.7% | (many diffs) |
| 19 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538668.3 | 86.7% | 91.5% | (many diffs) |
| 20 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538667.3 | 86.6% | 91.3% | (many diffs) |
| 21 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_006538666.3 | 86.4% | 91.1% | (many diffs) |
| 22 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250214.2 | 86.2% | 90.9% | (many diffs) |
| 23 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250212.2 | 86% | 90.7% | (many diffs) |
| 24 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250211.2 | 85.8% | 90.5% | (many diffs) |
| 25 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250210.2 | 85.6% | 90.3% | (many diffs) |
| 26 | mouse | 19273 | Ptpru | protein tyrosine phosphatas... | XM_011250216.1 | 77.7% | 83% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4368
- ORF length:
- 4299
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCCGTGCC CAGGCGCTCG TGCTGGCACT CACCTTCCAG CTCTGCGCGC 121 CGGAGACCGA GACTCCGGCA GCTGGCTGCA CCTTCGAGGA GGCAAGTGAC CCAGCAGTGC 181 CCTGCGAGTA CAGCCAGGCC CAGTACGATG ACTTCCAGTG GGAGCAAGTG CGAATCCACC 241 CTGGCACCCG GGCACCTGCG GACCTGCCCC ACGGCTCCTA CTTGATGGTC AACACTTCCC 301 AGCATGCCCC AGGCCAGCGA GCCCATGTCA TCTTCCAGAG CCTGAGCGAG AATGATACCC 361 ACTGTGTGCA GTTCAGCTAC TTCCTGTACA GCCGGGACGG GCACAGCCCG GGCACCCTGG 421 GCGTCTACGT GCGCGTTAAT GGGGGCCCCC TGGGCAGTGC TGTGTGGAAT ATGACTGGAT 481 CCCACGGCCG TCAGTGGCAC CAGGCTGAGC TGGCTGTCAG CACTTTCTGG CCCAATGAAT 541 ATCAGGTGCT GTTTGAGGCC CTCATCTCCC CAGACCGCAG GGGCTACATG GGCCTAGATG 601 ACATCCTGCT TCTCAGCTAC CCCTGCGCAA AGGCCCCACA CTTCTCCCGC CTGGGCGACG 661 TGGAGGTCAA CGCGGGCCAG AACGCGTCGT TCCAGTGCAT GGCCGCGGGC AGAGCGGCCG 721 AGGCCGAACG CTTCCTCTTG CAACGGCAGA GCGGGGCGCT GGTGCCGGCG GCGGGCGTGC 781 GGCACATCAG CCACCGGCGC TTCCTGGCCA CTTTCCCGCT GGCTGCCGTG AGCCGCGCCG 841 AGCAGGACCT GTACCGCTGT GTGTCCCAGG CCCCGCGCGG CGCGGGCGTC TCTAACTTCG 901 CGGAGCTCAT CGTCAAGGAG CCCCCAACTC CCATCGCGCC CCCACAGCTG CTGCGTGCTG 961 GCCCCACCTA CCTCATCATC CAGCTCAACA CCAACTCCAT CATTGGCGAC GGGCCGATCG 1021 TGCGCAAGGA GATTGAGTAC CGCATGGCGC GCGGGCCCTG GGCTGAGGTG CACGCCGTCA 1081 GCCTGCAGAC CTACAAGCTG TGGCACCTCG ACCCCGACAC AGAGTATGAG ATCAGCGTGC 1141 TGCTCACGCG TCCCGGAGAC GGCGGCACTG GCCGCCCTGG GCCACCCCTC ATCAGCCGCA 1201 CCAAATGCGC AGAGCCCATG AGGGCCCCCA AAGGCCTGGC TTTTGCTGAG ATCCAGGCCC 1261 GTCAGCTGAC CCTGCAGTGG GAACCACTGG GCTACAACGT GACGCGTTGC CACACCTATA 1321 CTGTGTCGCT GTGCTATCAC TACACCCTGG GCAGCAGCCA CAACCAGACC ATCCGAGAGT 1381 GTGTGAAGAC AGAGCAAGGT GTCAGCCGCT ACACCATCAA GAACCTGCTG CCCTATCGGA 1441 ACGTTCACGT GAGGCTTGTC CTCACTAACC CTGAGGGGCG CAAAGAGGGC AAGGAGGTCA 1501 CTTTCCAGAC GGATGAGGAT GTGCCCAGTG GGATTGCAGC CGAGTCCCTG ACCTTCACTC 1561 CACTGGAGGA CATGATCTTC CTCAAGTGGG AGGAGCCCCA GGAGCCCAAT GGTCTCATCA 1621 CCCAGTATGA GATCAGCTAC CAGAGCATCG AGTCATCAGA CCCGGCAGTG AACGTGCCAG 1681 GCCCACGACG TACCATCTCC AAGCTCCGCA ATGAGACCTA CCATGTCTTC TCCAACCTGC 1741 ACCCAGGCAC CACCTACCTG TTCTCCGTGC GGGCCCGCAC AGGCAAAGGC TTCGGCCAGG 1801 CGGCACTCAC TGAGATAACC ACTAACATCT CTGCTCCCAG CTTTGATTAT GCCGACATGC 1861 CGTCACCCCT GGGCGAGTCT GAGAACACCA TCACCGTGCT GCTGAGGCCG GCACAGGGCC 1921 GCGGTGCGCC CATCAGTGTG TACCAGGTGA TTGTGGAGGA GGAGCGGGCG CGGAGGCTGC 1981 GGCGGGAGCC AGGTGGACAG GACTGCTTCC CAGTGCCATT GACCTTCGAG GCGGCGCTGG 2041 CCCGAGGCCT GGTGCACTAC TTCGGGGCCG AACTGGCGGC CAGCAGTCTA CCTGAGGCCA 2101 TGCCCTTTAC CGTTGGTGAC AACCAGACCT ACCGAGGCTT CTGGAACCCA CCACTTGAGC 2161 CTAGGAAGGC CTATCTCATC TACTTCCAGG CAGCAAGCCA CCTGAAGGGG GAGACCCGGC 2221 TGAATTGCAT CCGCATTGCC AGGAAAGCTG CCTGCAAGGA AAGCAAGCGG CCCCTGGAGG 2281 TGTCCCAGAG ATCGGAGGAG ATGGGGCTTA TCCTGGGCAT CTGTGCAGGG GGGCTTGCTG 2341 TCCTCATCCT TCTCCTGGGT GCCATCATTG TCATCATCCG CAAAGGGAAG CCGGTGAACA 2401 TGACCAAGGC CACCGTCAAC TACCGCCAGG AGAAGACACA CATGATGAGC GCCGTGGACC 2461 GCAGCTTCAC AGACCAGAGC ACCCTGCAGG AGGACGAGCG GCTGGGCCTG TCCTTCATGG 2521 ACACCCATGG CTACAGCACC CGGGGAGACC AGCGCAGCGG TGGGGTCACT GAGGCCAGCA 2581 GCCTCCTGGG GGGCTCCCCG AGGCGTCCCT GTGGCCGGAA GGGCTCCCCA TATCACACGG 2641 GGCAGCTGCA CCCTGCGGTG CGTGTCGCAG ACCTTCTGCA GCACATCAAC CAGATGAAGA 2701 CGGCCGAGGG TTACGGCTTC AAGCAGGAGT ATGAGAGCTT CTTTGAAGGC TGGGACGCCA 2761 CAAAGAAGAA AGACAAGGTC AAGGGCAGCC GGCAGGAGCC AATGCCTGCC TATGATCGGC 2821 ACCGAGTGAA ACTGCACCCG ATGCTGGGAG ACCCCAATGC CGACTACATT AATGCCAACT 2881 ACATAGATGG TTACCACAGG TCAAACCACT TCATAGCCAC TCAAGGGCCG AAGCCTGAGA 2941 TGGTCTATGA CTTCTGGCGT ATGGTGTGGC AGGAGCACTG TTCCAGCATC GTCATGATCA 3001 CCAAGCTGGT CGAGGTGAAA TGCTCACGGT ACTGGCCGGA GGACTCAGAC ACCTACGGGG 3061 ACATCAAGAT TATGCTGGTG AAGACAGAGA CCCTGGCTGA GTATGTCGTG CGCACTTTTG 3121 CCCTGGAGCG GAGAGGCTAC TCTGCCCGGC ACGAGGTCCG CCAGTTCCAC TTCACAGCGT 3181 GGCCAGAGCA TGGCGTCCCC TACCATGCCA CGGGGCTGCT GGCTTTCATC CGGCGCGTGA 3241 AGGCCTCCAC CCCACCTGAT GCCGGGCCCA TTGTCATCCA CTGCAGCGCG GGCACCGGCC 3301 GCACAGGTTG CTATATCGTC CTGGATGTGA TGCTGGACAT GGCAGAGTGT GAGGGCGTCG 3361 TGGACATTTA CAACTGTGTG AAGACTCTCT GCTCCCGGCG TGTCAACATG ATCCAGACTG 3421 AGGAGCAGTA CATCTTCATT CATGATGCAA TCCTGGAGGC CTGCCTGTGT GGGGAGACCA 3481 CCATCCCTGT CAGTGAGTTC AAGGCCACCT ACAAGGAGAT GATCCGCATT GATCCTCAGA 3541 GTAATTCCTC CCAGCTGCGG GAAGAGTTCC AGACGCTGAA CTCGGTCACC CCGCCGCTGG 3601 ACGTGGAGGA GTGCAGCATC GCCCTGTTGC CCCGGAACCG CGACAAGAAC CGCAGCATGG 3661 ACGTCCTGCC GCCCGACCGC TGCCTGCCCT TCCTCATCTC CACTGATGGG GACTCCAACA 3721 ACTACATTAA TGCAGCCCTG ACTGACAGCT ACACACGGAG TGCGGCCTTC ATCGTGACCC 3781 TGCACCCGCT GCAGAGCACC ACGCCCGACT TCTGGCGGCT GGTCTACGAT TACGGGTGCA 3841 CCTCCATCGT CATGCTCAAC CAGCTGAACC AGTCCAACTC CGCCTGGCCC TGCCTGCAGT 3901 ACTGGCCAGA GCCAGGCCGG CAGCAATATG GCCTCATGGA GGTGGAGTTT ATGTCGGGCA 3961 CAGCTGATGA AGACTTAGTG GCTCGAGTCT TCCGGGTGCA GAACATCTCT CGGTTGCAGG 4021 AGGGGCACCT GCTGGTGCGG CACTTCCAGT TCCTGCGCTG GTCTGCATAC CGGGACACAC 4081 CTGACTCCAA GAAGGCCTTC TTGCACCTGC TGGCTGAGGT GGACAAGTGG CAGGCCGAGA 4141 GTGGGGATGG GCGCACCATC GTGCACTGCC TAAACGGGGG AGGACGCAGC GGCACCTTCT 4201 GCGCCTGCGC CACGGTCCTG GAGATGATCC GCTGCCACAA CTTGGTGGAC GTTTTCTTTG 4261 CTGCCAAAAC CCTCCGGAAC TACAAACCCA ACATGGTGGA GACCATGGAT CAGTACCACT 4321 TTTGCTACGA TGTGGCCCTG GAGTACTTGG AGGGGCTGGA GTCAAGATTG CCAACTTTCT 4381 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac