Construct: ORF ccsbBroadEn_07663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014673.1_s300c1, BRDN0000389992
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IGF2BP3 (10643)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10643 IGF2BP3 insulin like growth factor ... NM_006547.3 99.9% 100% 1332G>A
2 human 10643 IGF2BP3 insulin like growth factor ... XM_011515089.2 99% 99.1% 285_299del;1347G>A
3 human 10643 IGF2BP3 insulin like growth factor ... XM_011515092.2 83.7% 83.5% (many diffs)
4 human 10643 IGF2BP3 insulin like growth factor ... XM_011515093.2 83.7% 83.5% (many diffs)
5 human 10643 IGF2BP3 insulin like growth factor ... XM_011515090.3 80% 75.8% (many diffs)
6 human 10643 IGF2BP3 insulin like growth factor ... XM_006715639.2 72.8% 72.8% 0_1ins471;861G>A
7 human 10643 IGF2BP3 insulin like growth factor ... XM_011515091.2 72.8% 72.8% 0_1ins471;861G>A
8 mouse 140488 Igf2bp3 insulin-like growth factor ... NM_023670.3 91.8% 96.5% (many diffs)
9 mouse 140488 Igf2bp3 insulin-like growth factor ... XM_006505517.3 84.7% 87.1% (many diffs)
10 mouse 140488 Igf2bp3 insulin-like growth factor ... XR_377421.3 53.9% (many diffs)
11 mouse 140488 Igf2bp3 insulin-like growth factor ... XM_006505519.3 50.7% 53.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1803
ORF length:
1737
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CAAACTGTAT ATCGGAAACC TCAGCGAGAA CGCCGCCCCC TCGGACCTAG
121AAAGTATCTT CAAGGACGCC AAGATCCCGG TGTCGGGACC CTTCCTGGTG AAGACTGGCT
181ACGCGTTCGT GGACTGCCCG GACGAGAGCT GGGCCCTCAA GGCCATCGAG GCGCTTTCAG
241GTAAAATAGA ACTGCACGGG AAACCCATAG AAGTTGAGCA CTCGGTCCCA AAAAGGCAAA
301GGATTCGGAA ACTTCAGATA CGAAATATCC CGCCTCATTT ACAGTGGGAG GTGCTGGATA
361GTTTACTAGT CCAGTATGGA GTGGTGGAGA GCTGTGAGCA AGTGAACACT GACTCGGAAA
421CTGCAGTTGT AAATGTAACC TATTCCAGTA AGGACCAAGC TAGACAAGCA CTAGACAAAC
481TGAATGGATT TCAGTTAGAG AATTTCACCT TGAAAGTAGC CTATATCCCT GATGAAATGG
541CCGCCCAGCA AAACCCCTTG CAGCAGCCCC GAGGTCGCCG GGGGCTTGGG CAGAGGGGCT
601CCTCAAGGCA GGGGTCTCCA GGATCCGTAT CCAAGCAGAA ACCATGTGAT TTGCCTCTGC
661GCCTGCTGGT TCCCACCCAA TTTGTTGGAG CCATCATAGG AAAAGAAGGT GCCACCATTC
721GGAACATCAC CAAACAGACC CAGTCTAAAA TCGATGTCCA CCGTAAAGAA AATGCGGGGG
781CTGCTGAGAA GTCGATTACT ATCCTCTCTA CTCCTGAAGG CACCTCTGCG GCTTGTAAGT
841CTATTCTGGA GATTATGCAT AAGGAAGCTC AAGATATAAA ATTCACAGAA GAGATCCCCT
901TGAAGATTTT AGCTCATAAT AACTTTGTTG GACGTCTTAT TGGTAAAGAA GGAAGAAATC
961TTAAAAAAAT TGAGCAAGAC ACAGACACTA AAATCACGAT ATCTCCATTG CAGGAATTGA
1021CGCTGTATAA TCCAGAACGC ACTATTACAG TTAAAGGCAA TGTTGAGACA TGTGCCAAAG
1081CTGAGGAGGA GATCATGAAG AAAATCAGGG AGTCTTATGA AAATGATATT GCTTCTATGA
1141ATCTTCAAGC ACATTTAATT CCTGGATTAA ATCTGAACGC CTTGGGTCTG TTCCCACCCA
1201CTTCAGGGAT GCCACCTCCC ACCTCAGGGC CCCCTTCAGC CATGACTCCT CCCTACCCGC
1261AGTTTGAGCA ATCAGAAACG GAGACTGTTC ATCTGTTTAT CCCAGCTCTA TCAGTCGGTG
1321CCATCATCGG CAAGCAGGGC CAGCACATCA AGCAGCTTTC TCGCTTTGCT GGAGCTTCAA
1381TTAAGATTGC TCCAGCAGAA GCACCAGATG CTAAAGTGAG GATGGTGATT ATCACTGGAC
1441CACCAGAGGC TCAGTTCAAG GCTCAGGGAA GAATTTATGG AAAAATTAAA GAAGAAAACT
1501TTGTTAGTCC TAAAGAAGAG GTGAAACTTG AAGCTCATAT CAGAGTGCCA TCCTTTGCTG
1561CTGGCAGAGT TATTGGAAAA GGAGGCAAAA CGGTGAATGA ACTTCAGAAT TTGTCAAGTG
1621CAGAAGTTGT TGTCCCTCGT GACCAGACAC CTGATGAGAA TGACCAAGTG GTTGTCAAAA
1681TAACTGGTCA CTTCTATGCT TGCCAGGTTG CCCAGAGAAA AATTCAGGAA ATTCTGACTC
1741AGGTAAAGCA GCACCAACAA CAGAAGGCTC TGCAAAGTGG ACCACCTCAG TCAAGACGGA
1801AGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1861gcaacgaac

Download FASTA (ORF) (Full)

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