Construct: ORF ccsbBroadEn_07672
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010416.1_s300c1, BRDN0000386122
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RFPL3 (10738)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10738 | RFPL3 | ret finger protein like 3 | NM_006604.2 | 99.7% | 99.6% | 241C>A;792A>G |
| 2 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001159545.2 | 97.2% | 94% | (many diffs) |
| 3 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001159546.2 | 97.2% | 94% | (many diffs) |
| 4 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001364984.1 | 97.2% | 94% | (many diffs) |
| 5 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001364985.1 | 97.2% | 94% | (many diffs) |
| 6 | human | 5988 | RFPL1 | ret finger protein like 1 | XM_011530298.3 | 95.6% | 90.9% | (many diffs) |
| 7 | human | 5988 | RFPL1 | ret finger protein like 1 | XM_011530299.3 | 95.6% | 90.9% | (many diffs) |
| 8 | human | 5988 | RFPL1 | ret finger protein like 1 | XM_017028900.2 | 95.6% | 90.9% | (many diffs) |
| 9 | human | 5988 | RFPL1 | ret finger protein like 1 | XM_017028902.2 | 95.6% | 90.9% | (many diffs) |
| 10 | human | 10738 | RFPL3 | ret finger protein like 3 | NM_001098535.1 | 90.6% | 90.5% | 1_87del;328C>A;879A>G |
| 11 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001364982.1 | 90.3% | 87.4% | (many diffs) |
| 12 | human | 5988 | RFPL1 | ret finger protein like 1 | NM_021026.2 | 86.8% | 82.6% | (many diffs) |
| 13 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001098527.3 | 74% | 71.6% | (many diffs) |
| 14 | human | 10739 | RFPL2 | ret finger protein like 2 | XM_011529832.2 | 74% | 71.6% | (many diffs) |
| 15 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001364983.1 | 67.3% | 65.1% | (many diffs) |
| 16 | human | 10739 | RFPL2 | ret finger protein like 2 | NM_001364986.1 | 67.3% | 65.1% | (many diffs) |
| 17 | human | 10739 | RFPL2 | ret finger protein like 2 | XM_011529826.2 | 67.3% | 65.1% | (many diffs) |
| 18 | human | 10739 | RFPL2 | ret finger protein like 2 | XM_011529827.3 | 67.3% | 65.1% | (many diffs) |
| 19 | human | 10739 | RFPL2 | ret finger protein like 2 | XM_011529828.2 | 67.3% | 65.1% | (many diffs) |
| 20 | human | 10738 | RFPL3 | ret finger protein like 3 | XM_017028534.1 | 41% | 35% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 930
- ORF length:
- 864
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGCACTCTTC CAAGAAGCAA GCAGCTGTCC CGTCTGCTCA GACTATCTGG 121 AAAAACCAAT GTCCCTGGAG TGTGGATGCA CCGTCTGCCT CAAGTGCATC AATTCGCTGC 181 AGAAGGAGCC CCATGGGGAG GATCTGCTTT GCTGTTGCTG TTCCATGGTC TCTCAGAGGA 241 ACAAAATCAG GCCCAATCGG CAGCTAGAGA GGCTGGTTTC CCACATCAAG GAACTGGAGC 301 CCAAGATGAA GAAGATTCTA CAGATGAACC CAAGGATGCG GAAGTTCCAA GTGGATATGA 361 CCTTGGATGC CGACACAGCC AACAACTTCC TCCTCATTTC TGACGACCTC AGGAGCGTCC 421 GAAGTGGGCT CATCACACAG AATCGGCAAG ACCTTGCCGA GAGATTTGAC GTGTCCGTTT 481 GCATCCTGGG CTCCCCTCGC TTTACCTGTG GCCGCCACTA CTGGGAGGTG GACGTGGGAA 541 CAAGCACAGA ATGGGACCTG GGAGTCTGCA GAGAATCTGT TCACTGCAAA GGGAAGATCC 601 AGCTGACCAC AGAGCTTGGA TTCTGGACTG TGAGTTTGAG GGATGGAAGC CGCCTCTCTG 661 CCAGCACGGT GCCGCTGACT TTCCTCTTAG TAGACCGCAA GTTACAGCGA GTGGGGATTT 721 TTCTGGATAT GGGCATGCAG AACGTTTCCT TTTTTGATGC TGAAAGTGGT TCCCATGTCT 781 ATACATTCAG GAGCGTCTCT GCTGAGGAGC CACTGCGCCC ATTTTTGGCT CCTTCAATTC 841 CACCTAATGG TGATCAGGGT GTCTTGAGCA TCTGTCCTTT GATGAACTCA GGCACTACTG 901 ATGCTCCAGT CCGTCCTGGG GAGGCCAAAT ACCCAACTTT CTTGTACAAA GTtggcatta 961 taagaaagca ttgcttatca atttgttgca acgaac