Construct: ORF ccsbBroadEn_07718

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010039.1_s300c1, BRDN0000396076
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FERMT2 (10979)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10979 FERMT2 fermitin family member 2 NM_006832.3 99.9% 100% 885C>T
2 human 10979 FERMT2 fermitin family member 2 NM_001134999.1 98.9% 98.9% 885C>T;1602_1622del
3 human 10979 FERMT2 fermitin family member 2 XM_005267285.3 98.3% 98.4% 525_557del;918C>T
4 human 10979 FERMT2 fermitin family member 2 XM_006720010.3 97.7% 97.8% 885C>T;1602_1646del
5 human 10979 FERMT2 fermitin family member 2 XM_006720009.3 97.3% 97.4% 525_557del;918C>T;1635_1655del
6 human 10979 FERMT2 fermitin family member 2 XM_006720008.3 96.2% 96.3% 525_557del;918C>T;1635_1679del
7 human 10979 FERMT2 fermitin family member 2 NM_001135000.2 90.8% 90.8% (many diffs)
8 mouse 218952 Fermt2 fermitin family member 2 NM_146054.2 89.4% 98.2% (many diffs)
9 mouse 218952 Fermt2 fermitin family member 2 XM_006518828.2 88.5% 97.2% (many diffs)
10 mouse 218952 Fermt2 fermitin family member 2 XM_006518827.2 88% 96.6% (many diffs)
11 mouse 218952 Fermt2 fermitin family member 2 XM_006518826.2 87.1% 95.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2106
ORF length:
2040
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCTGGACGGG ATAAGGATGC CAGATGGCTG CTACGCGGAC GGGACGTGGG
121AACTGAGTGT CCATGTGACG GACCTGAACC GCGATGTCAC CCTGAGAGTG ACCGGCGAGG
181TGCACATTGG AGGCGTGATG CTTAAGCTGG TGGAGAAACT CGATGTAAAA AAAGATTGGT
241CTGACCATGC TCTCTGGTGG GAAAAGAAGA GAACTTGGCT TCTGAAGACA CATTGGACCT
301TAGATAAGTA TGGTATTCAG GCAGATGCTA AGCTTCAGTT CACCCCTCAG CACAAACTGC
361TCCGCCTGCA GCTTCCCAAC ATGAAGTATG TGAAGGTGAA AGTGAATTTC TCTGATAGAG
421TCTTCAAAGC TGTTTCTGAC ATCTGTAAGA CTTTTAATAT CAGACACCCC GAAGAACTTT
481CTCTCTTAAA GAAACCCAGA GATCCAACAA AGAAAAAAAA GAAGAAGCTA GATGACCAGT
541CTGAAGATGA GGCACTTGAA TTAGAGGGGC CTCTTATCAC TCCTGGATCA GGAAGTATAT
601ATTCAAGCCC AGGACTGTAT AGTAAAACAA TGACCCCCAC TTATGATGCT CATGATGGAA
661GCCCCTTGTC ACCAACTTCT GCTTGGTTTG GTGACAGTGC TTTGTCAGAA GGCAATCCTG
721GTATACTTGC TGTCAGTCAA CCAATCACGT CACCAGAAAT CTTGGCAAAA ATGTTCAAGC
781CTCAAGCTCT TCTTGATAAA GCAAAAATCA ACCAAGGATG GCTTGATTCC TCAAGATCTC
841TCATGGAACA AGATGTGAAG GAAAATGAGG CCTTGCTGCT CCGATTCAAG TATTACAGCT
901TTTTTGATTT GAATCCAAAG TATGATGCAA TCAGAATCAA TCAGCTTTAT GAGCAGGCCA
961AATGGGCCAT TCTCCTGGAA GAGATTGAAT GCACAGAAGA AGAAATGATG ATGTTTGCAG
1021CCCTGCAGTA TCATATCAAT AAGCTGTCAA TCATGACATC AGAGAATCAT TTGAACAACA
1081GTGACAAAGA AGTTGATGAA GTTGATGCTG CCCTTTCAGA CCTGGAGATT ACTCTGGAAG
1141GGGGTAAAAC GTCAACAATT TTGGGTGACA TTACTTCCAT TCCTGAACTT GCTGACTACA
1201TTAAAGTTTT CAAGCCAAAA AAGCTGACTC TGAAAGGTTA CAAACAATAT TGGTGCACCT
1261TCAAAGACAC ATCCATTTCT TGTTATAAGA GCAAAGAAGA ATCCAGTGGC ACACCAGCTC
1321ATCAGATGAA CCTCAGGGGA TGTGAAGTTA CCCCAGATGT AAACATTTCA GGCCAAAAAT
1381TTAACATTAA ACTCCTGATT CCAGTTGCAG AAGGCATGAA TGAAATCTGG CTTCGTTGTG
1441ACAATGAAAA ACAGTATGCA CACTGGATGG CAGCCTGCAG ATTAGCCTCC AAAGGCAAGA
1501CCATGGCGGA CAGTTCTTAC AACTTAGAAG TTCAGAATAT TCTTTCCTTT CTGAAGATGC
1561AGCATTTAAA CCCAGATCCT CAGTTAATAC CAGAGCAGAT CACGACTGAT ATAACTCCTG
1621AATGTTTGGT GTCTCCCCGC TATCTAAAAA AGTATAAGAA CAAGCAGATA ACAGCGAGAA
1681TCTTGGAGGC CCATCAGAAT GTAGCTCAGA TGAGTCTAAT TGAAGCCAAG ATGAGATTTA
1741TTCAAGCTTG GCAGTCACTA CCTGAATTTG GCATCACTCA CTTCATTGCA AGGTTCCAAG
1801GGGGCAAAAA AGAAGAACTT ATTGGAATTG CATACAACAG ACTGATTCGG ATGGATGCCA
1861GCACTGGAGA TGCAATTAAA ACATGGCGTT TCAGCAACAT GAAACAGTGG AATGTCAACT
1921GGGAAATCAA AATGGTCACC GTAGAGTTTG CAGATGAAGT ACGATTGTCC TTCATTTGTA
1981CTGAAGTAGA TTGCAAAGTG GTTCATGAAT TCATTGGTGG CTACATATTT CTCTCAACAC
2041GTGCAAAAGA CCAAAACGAG AGTTTAGATG AAGAGATGTT CTACAAACTT ACCAGTGGTT
2101GGGTGTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
2161gttgcaacga ac

Download FASTA (ORF) (Full)

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