Construct: ORF ccsbBroadEn_07749
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008888.1_s300c1, BRDN0000396842
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPUL1 (11100)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001321208.2 | 99.9% | 99.8% | 4G>A;2112T>C |
| 2 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001321211.2 | 99.9% | 99.8% | 4G>A;2112T>C |
| 3 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_144732.5 | 99.9% | 99.8% | 4G>A;2112T>C |
| 4 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258463.4 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 5 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258464.4 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 6 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258465.5 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 7 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526393.3 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 8 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526394.3 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 9 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526395.3 | 98.6% | 98.5% | 4G>A;1960_1989del;2142T>C |
| 10 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_001301016.3 | 98.4% | 98.4% | 1_33del;37G>A;2145T>C |
| 11 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258461.5 | 97.2% | 97.1% | (many diffs) |
| 12 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | NM_007040.6 | 88.2% | 88.2% | 1_300del;304G>A;2412T>C |
| 13 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_005258459.4 | 87.2% | 87.1% | (many diffs) |
| 14 | human | 11100 | HNRNPUL1 | heterogeneous nuclear ribon... | XM_011526392.3 | 80.8% | 80.7% | 1_300del;304G>A;2259_2260ins192 |
| 15 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | XM_006539855.3 | 89.5% | 95.3% | (many diffs) |
| 16 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | XM_006539856.2 | 89.5% | 95.3% | (many diffs) |
| 17 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | NM_144922.2 | 79.1% | 84.3% | (many diffs) |
| 18 | mouse | 232989 | Hnrnpul1 | heterogeneous nuclear ribon... | NM_178089.2 | 24.7% | 25.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2334
- ORF length:
- 2268
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAATATTACC AGGCAGAACC AATTCTACGA TACCCAAGTC ATCAAACAAG 121 AAAACGAGTC AGGCTACGAG AGGAGACCAC TGGAAATGGA GCAGCAGCAG GCCTATCGTC 181 CAGAAATGAA GACAGAGATG AAGCAAGGAG CACCCACCAG CTTCCTCCCG CCTGAAGCTT 241 CTCAACTCAA GCCAGACAGG CAGCAATTCC AGAGTCGAAA GAGGCCTTAT GAAGAAAACC 301 GGGGACGGGG GTACTTTGAG CACCGAGAGG ATAGGAGGGG CCGCTCTCCT CAGCCTCCTG 361 CTGAAGAGGA TGAAGATGAC TTTGATGATA CCCTTGTTGC TATTGACACC TATAACTGCG 421 ACCTCCACTT CAAGGTGGCC CGAGATCGGA GTAGTGGCTA TCCGCTCACA ATTGAGGGCT 481 TTGCATACCT GTGGTCAGGA GCCCGTGCCA GCTATGGGGT CAGAAGGGGC CGTGTATGCT 541 TCGAGATGAA GATCAATGAG GAAATCTCCG TGAAGCACCT TCCGTCTACA GAGCCTGACC 601 CCCACGTGGT CCGTATCGGC TGGTCCCTGG ACTCCTGCAG CACCCAGCTA GGCGAAGAGC 661 CTTTCTCCTA TGGCTATGGA GGCACTGGGA AGAAGTCCAC CAATAGCCGG TTTGAAAACT 721 ACGGAGACAA GTTTGCAGAG AACGATGTGA TTGGCTGCTT TGCGGATTTT GAATGTGGAA 781 ATGACGTGGA ACTGTCTTTT ACCAAGAATG GAAAGTGGAT GGGCATTGCT TTCCGAATCC 841 AGAAGGAAGC CTTGGGGGGT CAGGCCCTCT ATCCTCATGT CCTGGTGAAG AATTGCGCAG 901 TGGAGTTCAA CTTCGGACAG AGAGCAGAGC CCTACTGTTC TGTCCTCCCG GGGTTTACCT 961 TCATCCAGCA CCTTCCCCTT AGTGAGCGTA TCCGGGGCAC CGTTGGACCA AAGAGCAAGG 1021 CAGAATGTGA GATTCTGATG ATGGTGGGCC TGCCTGCTGC TGGCAAGACC ACATGGGCCA 1081 TCAAACATGC AGCCTCCAAC CCTTCCAAGA AGTACAACAT CCTGGGTACC AATGCCATCA 1141 TGGATAAGAT GCGGGTGATG GGCCTACGCC GGCAGCGGAA CTATGCTGGC CGCTGGGATG 1201 TCCTGATCCA GCAGGCCACC CAGTGCCTCA ACCGCCTCAT CCAGATTGCT GCCCGCAAGA 1261 AACGCAACTA TATCCTAGAT CAGACAAATG TTTATGGGTC AGCCCAGAGA CGAAAAATGA 1321 GACCATTTGA AGGCTTCCAG CGCAAAGCTA TTGTAATTTG TCCCACTGAC GAGGACCTAA 1381 AAGACCGAAC AATAAAGCGA ACCGACGAGG AAGGGAAGGA TGTCCCAGAT CATGCGGTCT 1441 TAGAAATGAA AGCCAACTTC ACGTTGCCAG ATGTTGGGGA CTTCCTGGAT GAGGTTCTGT 1501 TCATTGAGCT GCAGCGGGAG GAAGCGGACA AGCTAGTGAG GCAGTACAAC GAGGAAGGCC 1561 GCAAGGCTGG GCCACCCCCT GAAAAGCGCT TTGACAACCG AGGTGGTGGT GGCTTCCGGG 1621 GCCGCGGGGG TGGTGGTGGC TTCCAGCGCT ATGAAAACCG AGGACCCCCT GGAGGCAACC 1681 GTGGCGGCTT CCAGAACCGA GGGGGAGGCA GCGGTGGAGG AGGCAACTAC CGAGGAGGTT 1741 TCAACCGCAG CGGAGGTGGT GGCTATAGCC AGAACCGCTG GGGTAACAAC AACCGGGATA 1801 ACAACAACTC CAACAACAGA GGCAGCTACA ACCGGGCTCC CCAGCAACAG CCGCCACCAC 1861 AGCAGCCTCC GCCACCACAG CCACCACCCC AGCAGCCACC GCCACCACCC AGCTACAGCC 1921 CTGCTCGGAA CCCCCCAGGG GCCAGCACCT ACAATAAGAA CAGCAACATC CCTGGCTCAA 1981 GCGCCAATAC CAGCACCCCC ACCGTCAGCA GCTACAGCCC TCCACAGCCG AGTTACAGCC 2041 AGCCACCCTA CAACCAGGGA GGTTACAGCC AGGGCTACAC AGCCCCACCG CCTCCACCTC 2101 CACCACCACC TGCCTACAAC TATGGGAGCT ACGGCGGTTA CAACCCGGCC CCCTATACCC 2161 CACCGCCACC CCCCACCGCA CAGACCTACC CTCAGCCCAG CTATAACCAG TATCAGCAGT 2221 ATGCCCAGCA GTGGAACCAG TACTATCAGA ACCAGGGCCA GTGGCCGCCA TACTACGGGA 2281 ACTACGACTA CGGGAGCTAC TCCGGGAACA CACAGGGTGG CACAAGTACA CAGTACCCAA 2341 CTTTCATGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac