Transcript: Mouse NM_144922.2

Mus musculus heterogeneous nuclear ribonucleoprotein U-like 1 (Hnrnpul1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Hnrnpul1 (232989)
Length:
2884
CDS:
86..2665

Additional Resources:

NCBI RefSeq record:
NM_144922.2
NBCI Gene record:
Hnrnpul1 (232989)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_144922.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123481 GCCTACAACTATGGGAGCTAT pLKO.1 2441 CDS 100% 4.950 3.960 N Hnrnpul1 n/a
2 TRCN0000287568 GCCTACAACTATGGGAGCTAT pLKO_005 2441 CDS 100% 4.950 3.960 N Hnrnpul1 n/a
3 TRCN0000123482 CGGACATTATGTCATGGACAA pLKO.1 373 CDS 100% 4.050 3.240 N Hnrnpul1 n/a
4 TRCN0000123479 GCTTCTAATAGCACCTGCCTT pLKO.1 2700 3UTR 100% 2.640 2.112 N Hnrnpul1 n/a
5 TRCN0000317907 GCTTCTAATAGCACCTGCCTT pLKO_005 2700 3UTR 100% 2.640 2.112 N Hnrnpul1 n/a
6 TRCN0000123483 CCCGAAAGAAGCGAAACTATA pLKO.1 1575 CDS 100% 13.200 9.240 N Hnrnpul1 n/a
7 TRCN0000295038 TCAGTGCCTCAACCGTCTTAT pLKO_005 1543 CDS 100% 13.200 9.240 N Hnrnpul1 n/a
8 TRCN0000123480 GCCCGAAAGAAGCGAAACTAT pLKO.1 1574 CDS 100% 5.625 3.938 N Hnrnpul1 n/a
9 TRCN0000287567 GCCCGAAAGAAGCGAAACTAT pLKO_005 1574 CDS 100% 5.625 3.938 N Hnrnpul1 n/a
10 TRCN0000295096 TACCCTCAGCCCAGCTATAAC pLKO_005 2516 CDS 100% 0.000 0.000 N Hnrnpul1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_144922.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07750 pDONR223 99.6% 90% 94.8% None (many diffs) n/a
2 ccsbBroad304_07750 pLX_304 0% 90% 94.8% V5 (many diffs) n/a
3 TRCN0000474866 CGACCAATATAGTCTTGACAGAGT pLX_317 17.8% 90% 94.8% V5 (many diffs) n/a
4 ccsbBroadEn_11594 pDONR223 100% 84.6% 89.3% None (many diffs) n/a
5 ccsbBroad304_11594 pLX_304 0% 84.6% 89.3% V5 (many diffs) n/a
6 TRCN0000471325 CGGTCTCGAGCTGCCTTCAGGCTC pLX_317 9.8% 84.6% 89.3% V5 (many diffs) n/a
7 ccsbBroadEn_07749 pDONR223 100% 79.1% 84.3% None (many diffs) n/a
8 ccsbBroad304_07749 pLX_304 0% 79.1% 84.3% V5 (many diffs) n/a
9 TRCN0000480328 TTATTAAAAGCTTTGCAGTCAATT pLX_317 17.1% 79.1% 84.3% V5 (many diffs) n/a
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