Construct: ORF ccsbBroadEn_07750

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001098.1_s300c1, BRDN0000393308
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPUL1 (11100)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_007040.6 99.8% 99.7% 4G>T;271G>T;2412T>C
2 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258459.4 98.7% 98.6% (many diffs)
3 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526392.3 92.4% 92.2% 4G>T;271G>T;2259_2260ins192
4 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001301016.3 88.9% 88.6% (many diffs)
5 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321208.2 88.2% 88.3% 0_1ins300;2112T>C
6 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321211.2 88.2% 88.3% 0_1ins300;2112T>C
7 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_144732.5 88.2% 88.3% 0_1ins300;2112T>C
8 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258461.5 87.9% 87.6% (many diffs)
9 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258463.4 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
10 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258464.4 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
11 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258465.5 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
12 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526393.3 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
13 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526394.3 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
14 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526395.3 87.2% 87.2% 0_1ins300;1960_1989del;2142T>C
15 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_144922.2 90% 94.8% (many diffs)
16 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539855.3 79.2% 84.4% (many diffs)
17 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539856.2 79.2% 84.4% (many diffs)
18 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_178089.2 35.6% 36.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2634
ORF length:
2568
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TGTGCGCCGT CTGAAGGTGA ACGAACTTCG CGAGGAGCTG CAGCGCCGCG
121GCCTGGACAC TCGAGGCCTC AAGGCCGAGC TTGCTGAGCG GCTGCAGGCG GCGTTGGAGG
181CCGAGGAGCC TGACGACGAG CGGGAGCTCG ACGCCGACGA CGAACCGGGG CGACCCGGGC
241ACATCAACGA GGAGGTCGAG ACCGAGGGGG GCTCCGAGct ggaggggACC GCGCAGCCAC
301CGCCGCCCGG GCTGCAGCCG CACGCGGAGC CCGGCTGCTA CTCGGGGCCG GACGGACATT
361ATGCCATGGA CAATATTACC AGGCAGAACC AATTCTACGA TACCCAAGTC ATCAAACAAG
421AAAACGAGTC AGGCTACGAG AGGAGACCAC TGGAAATGGA GCAGCAGCAG GCCTATCGTC
481CAGAAATGAA GACAGAGATG AAGCAAGGAG CACCCACCAG CTTCCTCCCG CCTGAAGCTT
541CTCAACTCAA GCCAGACAGG CAGCAATTCC AGAGTCGAAA GAGGCCTTAT GAAGAAAACC
601GGGGACGGGG GTACTTTGAG CACCGAGAGG ATAGGAGGGG CCGCTCTCCT CAGCCTCCTG
661CTGAAGAGGA TGAAGATGAC TTTGATGATA CCCTTGTTGC TATTGACACC TATAACTGCG
721ACCTCCACTT CAAGGTGGCC CGAGATCGGA GTAGTGGCTA TCCGCTCACA ATTGAGGGCT
781TTGCATACCT GTGGTCAGGA GCCCGTGCCA GCTATGGGGT CAGAAGGGGC CGTGTATGCT
841TCGAGATGAA GATCAATGAG GAAATCTCCG TGAAGCACCT TCCGTCTACA GAGCCTGACC
901CCCACGTGGT CCGTATCGGC TGGTCCCTGG ACTCCTGCAG CACCCAGCTA GGCGAAGAGC
961CTTTCTCCTA TGGCTATGGA GGCACTGGGA AGAAGTCCAC CAATAGCCGG TTTGAAAACT
1021ACGGAGACAA GTTTGCAGAG AACGATGTGA TTGGCTGCTT TGCGGATTTT GAATGTGGAA
1081ATGACGTGGA ACTGTCTTTT ACCAAGAATG GAAAGTGGAT GGGCATTGCT TTCCGAATCC
1141AGAAGGAAGC CTTGGGGGGT CAGGCCCTCT ATCCTCATGT CCTGGTGAAG AATTGCGCAG
1201TGGAGTTCAA CTTCGGACAG AGAGCAGAGC CCTACTGTTC TGTCCTCCCG GGGTTTACCT
1261TCATCCAGCA CCTTCCCCTT AGTGAGCGTA TCCGGGGCAC CGTTGGACCA AAGAGCAAGG
1321CAGAATGTGA GATTCTGATG ATGGTGGGCC TGCCTGCTGC TGGCAAGACC ACATGGGCCA
1381TCAAACATGC AGCCTCCAAC CCTTCCAAGA AGTACAACAT CCTGGGTACC AATGCCATCA
1441TGGATAAGAT GCGGGTGATG GGCCTACGCC GGCAGCGGAA CTATGCTGGC CGCTGGGATG
1501TCCTGATCCA GCAGGCCACC CAGTGCCTCA ACCGCCTCAT CCAGATTGCT GCCCGCAAGA
1561AACGCAACTA TATCCTAGAT CAGACAAATG TTTATGGGTC AGCCCAGAGA CGAAAAATGA
1621GACCATTTGA AGGCTTCCAG CGCAAAGCTA TTGTAATTTG TCCCACTGAC GAGGACCTAA
1681AAGACCGAAC AATAAAGCGA ACCGACGAGG AAGGGAAGGA TGTCCCAGAT CATGCGGTCT
1741TAGAAATGAA AGCCAACTTC ACGTTGCCAG ATGTTGGGGA CTTCCTGGAT GAGGTTCTGT
1801TCATTGAGCT GCAGCGGGAG GAAGCGGACA AGCTAGTGAG GCAGTACAAC GAGGAAGGCC
1861GCAAGGCTGG GCCACCCCCT GAAAAGCGCT TTGACAACCG AGGTGGTGGT GGCTTCCGGG
1921GCCGCGGGGG TGGTGGTGGC TTCCAGCGCT ATGAAAACCG AGGACCCCCT GGAGGCAACC
1981GTGGCGGCTT CCAGAACCGA GGGGGAGGCA GCGGTGGAGG AGGCAACTAC CGAGGAGGTT
2041TCAACCGCAG CGGAGGTGGT GGCTATAGCC AGAACCGCTG GGGTAACAAC AACCGGGATA
2101ACAACAACTC CAACAACAGA GGCAGCTACA ACCGGGCTCC CCAGCAACAG CCGCCACCAC
2161AGCAGCCTCC GCCACCACAG CCACCACCCC AGCAGCCACC GCCACCACCC AGCTACAGCC
2221CTGCTCGGAA CCCCCCAGGG GCCAGCACCT ACAATAAGAA CAGCAACATC CCTGGCTCAA
2281GCGCCAATAC CAGCACCCCC ACCGTCAGCA GCTACAGCCC TCCACAGCCG AGTTACAGCC
2341AGCCACCCTA CAACCAGGGA GGTTACAGCC AGGGCTACAC AGCCCCACCG CCTCCACCTC
2401CACCACCACC TGCCTACAAC TATGGGAGCT ACGGCGGTTA CAACCCGGCC CCCTATACCC
2461CACCGCCACC CCCCACCGCA CAGACCTACC CTCAGCCCAG CTATAACCAG TATCAGCAGT
2521ATGCCCAGCA GTGGAACCAG TACTATCAGA ACCAGGGCCA GTGGCCGCCA TACTACGGGA
2581ACTACGACTA CGGGAGCTAC TCCGGGAACA CACAGGGTGG CACAAGTACA CAGTACCCAA
2641CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)