Construct: ORF ccsbBroadEn_07806

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013486.1_s300c1, BRDN0000389891
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RHOBTB3 (22836)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22836 RHOBTB3 Rho related BTB domain cont... NM_014899.4 99.7% 99.6% (many diffs)
2 human 22836 RHOBTB3 Rho related BTB domain cont... XM_011543279.2 79.9% 79.8% 59G>A;510G>A;679_680ins366
3 human 22836 RHOBTB3 Rho related BTB domain cont... XM_017009236.1 68.1% 68% 0_1ins582;195C>T;202A>G
4 human 22836 RHOBTB3 Rho related BTB domain cont... XM_017009237.1 68.1% 68% 0_1ins582;195C>T;202A>G
5 mouse 73296 Rhobtb3 Rho-related BTB domain cont... NM_028493.2 89.7% 95.5% (many diffs)
6 mouse 73296 Rhobtb3 Rho-related BTB domain cont... XM_006517410.3 89.6% 95.4% (many diffs)
7 mouse 73296 Rhobtb3 Rho-related BTB domain cont... XM_006517411.3 81.2% 86.2% (many diffs)
8 mouse 73296 Rhobtb3 Rho-related BTB domain cont... XM_011244573.2 73.5% 74.6% (many diffs)
9 mouse 73296 Rhobtb3 Rho-related BTB domain cont... XM_011244574.2 69.3% 73.1% (many diffs)
10 mouse 73296 Rhobtb3 Rho-related BTB domain cont... XM_006517412.3 60.7% 64.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1899
ORF length:
1833
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CATCCACATC GTGGCGCTGG GGAACGAGGG GGACACATTC CACCAGGACA
121ACCAGCCGTC GGGGCTTATC CGCACTTACC TGGGGAGAAG CCCTCTGGTC TCCGGGGACG
181AGAGCAGCTT GTTGCTGAAC GCGGCCAGCA CGGTCGCGCG TCCGGTGTTC ACCGAGTATC
241AGGCCAGTGC GTTTGGGAAT GTCAAGCTGG TGGTCCACGA CTGTCCCGTC TGGGACATAT
301TTGACAGTGA TTGGTACACT TCTCGAAATC TAATTGGGGG CGCTGACATC ATTGTGATCA
361AATACAACGT TAATGACAAG TTTTCATTCC ATGAAGTAAA GGATAATTAT ATTCCAGTGA
421TAAAAAGAGC ATTAAATTCA GTTCCAGTAA TTATTGCTGC TGTTGGTACC AGACAAAATG
481AAGAGTTACC TTGTACATGC CCACTATGTA CCTCAGACAG AGGGAGCTGT GTTAGTACAA
541CTGAAGGGAT CCAACTTGCA AAAGAACTAG GAGCAACCTA TCTTGAACTC CACAGCCTTG
601ATGACTTCTA CATAGGAAAG TATTTTGGAG GAGTGTTGGA GTATTTTATG ATTCAAGCCT
661TAAATCAGAA GACAAGTGAA AAAATGAAGA AAAGAAAAAT GAGCAACTCC TTTCATGGAA
721TTAGACCACC TCAACTTGAA CAACCAGAAA AAATGCCTGT CTTAAAGGCT GAAGCGTCAC
781ATTATAACTC TGACTTAAAT AACTTGCTGT TCTGCTGCCA GTGTGTGGAC GTGGTATTTT
841ATAACCCCGA TTTAAAGAAA GTTGTAGAGG CCCACAAGAT CGTTCTCTGC GCTGTAAGCC
901ATGTTTTCAT GCTGCTTTTC AATGTGAAGA GTCCCACTGA CATTCAGGAT TCCAGTATCA
961TCCGAACTAC CCAGGATCTT TTTGCTATAA ACAGAGATAC TGCATTTCCA GGTGCTAGCC
1021ATGAATCTTC AGGCAACCCA CCATTACGAG TCATTGTTAA AGACGCCCTC TTCTGTTCTT
1081GTTTATCAGA CATCCTTCGC TTCATTTATT CAGGTGCTTT TCAGTGGGAA GAATTGGAAG
1141AAGATATCAG GAAGAAGTTG AAAGATTCTG GGGATGTTTC AAATGTAATC GAGAAAGTTA
1201AATGCATTTT AAAAACACCA GGAAAGATTA ATTGCCTAAG GAATTGCAAA ACCTATCAAG
1261CCAGAAAACC TTTGTGGTTT TATAACACTT CCCTCAAGTT TTTCCTTAAT AAGCCGATGC
1321TTGCCGATGT TGTCTTCGAA ATTCAAGGTA CGACAGTGCC AGCCCACAGG GCCATCCTGG
1381TGGCCCGTTG TGAAGTGATG GCAGCCATGT TTAATGGTAA TTACATGGAA GCAAAGAGTG
1441TCCTGATTCC CGTTTATGGT GTTTCCAAAG AGACTTTCTT GTCATTTTTA GAATACCTGT
1501ACACAGACTC CTGCTGCCCA GCTGGCATAT TCCAGGCCAT GTGTCTCCTG ATCTGTGCCG
1561AGATGTACCA AGTGTCCAGA CTGCAGCACA TCTGTGAGCT GTTCATCATT ACCCAGCTGC
1621AGAGCATGCC AAGCAGGGAA CTGGCATCCA TGAACCTTGA TATAGTTGAC CTGCTTAAAA
1681AGGCCAAGTT TCACCACTCT GATTGCCTTT CAACCTGGCT ACTTCATTTC ATTGCTACTA
1741ACTACCTCAT CTTCAGTCAA AAGCCTGAAT TTCAGGATCT TTCAGTGGAA GAACGCAGTT
1801TTGTTGAAAA GCACAGATGG CCGTCGAATA TGTACTTGAA GCAGCTTGCG GAATACAGGA
1861AGTATATTCA CTCCCGGAAA TGTCGTTGCT TAGTAATGTA CCCAACTTTC TTGTACAAAG
1921Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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