Construct: ORF ccsbBroadEn_07815
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015575.1_s300c1, BRDN0000385458
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR47 (22911)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22911 | WDR47 | WD repeat domain 47 | NM_014969.5 | 99.8% | 99.6% | (many diffs) |
| 2 | human | 22911 | WDR47 | WD repeat domain 47 | NM_001142551.1 | 99.7% | 99.5% | (many diffs) |
| 3 | human | 22911 | WDR47 | WD repeat domain 47 | XM_017000697.2 | 99.7% | 99.5% | (many diffs) |
| 4 | human | 22911 | WDR47 | WD repeat domain 47 | XM_006710460.4 | 99.6% | 99.4% | (many diffs) |
| 5 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541030.1 | 99.6% | 99.4% | (many diffs) |
| 6 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541028.3 | 99.5% | 99.3% | (many diffs) |
| 7 | human | 22911 | WDR47 | WD repeat domain 47 | NM_001142550.1 | 99.1% | 98.9% | (many diffs) |
| 8 | human | 22911 | WDR47 | WD repeat domain 47 | XM_017000696.2 | 98.9% | 98.8% | (many diffs) |
| 9 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541029.2 | 98.8% | 98.7% | (many diffs) |
| 10 | human | 22911 | WDR47 | WD repeat domain 47 | XM_024454177.1 | 98.8% | 98.7% | (many diffs) |
| 11 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541027.3 | 98.7% | 98.6% | (many diffs) |
| 12 | human | 22911 | WDR47 | WD repeat domain 47 | XM_011541031.1 | 88.1% | 88% | (many diffs) |
| 13 | mouse | 99512 | Wdr47 | WD repeat domain 47 | NM_181400.3 | 90% | 95.2% | (many diffs) |
| 14 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_017319819.1 | 90% | 95.2% | (many diffs) |
| 15 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240311.2 | 89.9% | 95.1% | (many diffs) |
| 16 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502417.3 | 89.8% | 95% | (many diffs) |
| 17 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240310.1 | 89.7% | 94.9% | (many diffs) |
| 18 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240309.1 | 89.3% | 94.4% | (many diffs) |
| 19 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502414.3 | 89.1% | 94.2% | (many diffs) |
| 20 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_006502415.3 | 89.1% | 94.2% | (many diffs) |
| 21 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_017319818.1 | 89.1% | 94.2% | (many diffs) |
| 22 | mouse | 99512 | Wdr47 | WD repeat domain 47 | XM_011240308.1 | 89% | 94.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2826
- ORF length:
- 2760
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GGCTGAAGAT ACAGTGAATG TAAAAGAGGT TGAAATCATT AAGCTAATTT 121 TGGACTTCCT GAATTCAAAG AAGCTTCACA TTAGTATGCT GGCCCTGGAG AAGGAAAGTG 181 GAGTCATAAA TGGCCTGTTT TCAGATGATA TGCTTTTCCT GAGGCAGCTA ATACTTGATG 241 GTCAATGGGA TGAAGTTCTT CAGTTCATTC AGCCTCTAGA ATGTATGGAA AAATTTGACA 301 AAAAAAGGTT TCGTTATATT ATCCTGAAGC AGAAGTTTTT AGAAGCTTTA TGTGTTAACA 361 ACGCGATGTC AGCAGAAGAT GAGCCCCAGC ATCTGGAATT TACCATGCAA GAAGCTGTGC 421 AATGTTTACA TGCTCTAGAA GAATACTGTC CTTCTAAAGA TGACTATAGT AAGCTCTGTT 481 TGCTTTTGAC TTTGCCTCGT CTGACCAATC ATGCCGAGTT TAAGGACTGG AATCCCAGCA 541 CCGCACGAGT TCACTGTTTT GAAGAGGCTT GTGTCATGGT TGCAGAATTC ATCCCTGCTG 601 ATAGGAAGCT AAGTGAAGCT GGTTTTAAGG CTAGTAACAA TCGTTTATTT CAGCTTGTAA 661 TGAAAGGCCT GCTTTATGAA TGCTGTGTAG AATTTTGTCA GAGTAAAGCA ACTGGAGAAG 721 AAATTACAGA AAGCGAAGTG CTTCTTGGCA TCGACCTCTT ATGTGGTAAT GGTTGTGATG 781 ATTTGGATCT GAGTTTACTG TCATGGCTTC AGAATCTTCC ATCTTCTGTC TTCTCTTGTG 841 CTTTTGAACA GAAAATGCTT AATATTCATG TTGACAAACT TCTGAAACCT ACAAAAGCTG 901 CATATGCTGA TCTTTTGACT CCTCTTATCA GCAAACTCTC TCCCTATCCA TCATCCCCAA 961 TGAGAAGGCC TCAATCAGCT GATGCCTATA TGACCCGCTC TCTGAATCCT GCTTTAGATG 1021 GCCTCACCTG TGGACTAACC AGTCATGATA AGAGAATTTC AGACCTTGGA AACAAAACTT 1081 CTCCAATGTC ACACTCCTTT GCTAACTTCC ATTATCCAGG GGTACAAAAC CTCAGTAGAA 1141 GTCTCATGCT TGAGAATACA GAATGTCACA GTATTTACGA AGAATCCCCT GAGCGAAGTG 1201 ATACACCTGT TGATGCACAG AGGCCTATCG GCAGTGAAAT CTTGGGCCAG AGTTCAGTTT 1261 CAGAAAAAGA GCCTGCAAAT GGAGCACAGA ATCCAGGACC AGCTAAACAA GAAAAAAATG 1321 AGCTTCGAGA TTCAACAGAA CAATTTCAAG AATATTATAG GCAAAGATTA CGCTATCAAC 1381 AGCATTTAGA ACAGAAGGAG CAACAGCGGC AGATATACCA ACAGATGTTG CTTGAAGGAG 1441 GCGTGAATCA GGAGGATGGT CCTGATCAGC AGCAGAATCT TACTGAACAG TTCCTTAATA 1501 GGTCCATTCA AAAGCTTGGT GAATTAAATA TTGGAATGGA TGGCCTTGGT AATGAGGTAT 1561 CAGCACTCAA CCAGCAATGT AATGGGAGCA AAGGCAATGG ATCTAATGGT TCTTCTGTGA 1621 CTAGTTTTAC TACACCACCC CAAGACTCTA GTCAGAGATT AACACATGAT GCTTCAAATA 1681 TTCATACAAG CACTCCTCGT AATCCTGGAT CAACAAATCA CATACCTTTT CTGGAGGAAT 1741 CACCTTGTGG AAGCCAAATC TCTTCAGAAC ATTCGGTCAT TAAGCCACCT CTTGGAGATT 1801 CTCCAGGGAG TCTTTCAAGG TCGAAAGGGG AAGAGGATGA CAAATCAAAA AAGCAGTTTG 1861 TTTGTATTAA TATCCTAGAA GACACACAAG CTGTTAGAGC AGTGGCTTTT CATCCAGCTG 1921 GAGGTTTATA TGCTGTTGGT TCAAATTCAA AAACTCTGAG AGTATGTGCC TATCCAGATG 1981 TAATTGATCC AAGTGCACAT GAGACTCCTA AGCAGCCGGT GGTACGTTTT AAAAGGAATA 2041 AACATCATAA AGGATCCATT TACTGTGTGG CCTGGAGTCC TTGTGGGCAG TTATTAGCAA 2101 CAGGATCAAA TGACAAATAC GTCAAAGTGC TGCCCTTCAA TGCAGAGACT TGTAACGCAA 2161 CAGGACCAGA TCTGGAATTT AGTATGCATG ATGGAACAAT TAGAGACTTG GCATTTATGG 2221 AAGGCCCAGA AAGCGGAGGA GCTATTTTAA TAAGTGCTGG AGCAGGGGAT TGTAACATTT 2281 ATACAACCGA TTGTCAAAGA GGACAGGGCC TCCATGCTTT GAGTGGACAT ACTGGGCATA 2341 TTTTAGCACT TTATACCTGG AGTGGCTGGA TGATTGCATC TGGTTCCCAA GATAAGACTG 2401 TTGGATTTTG GGATCTTCGA GTACCAAGTT GTGCTCGTGT TGTTGGCACA ACATTTCATG 2461 GAACTGGCAG TGCAGTGGCA TCTGTAGCTG TAGATCCCAG TGGTCGTCTC TTAGCCACAG 2521 GTCAAGAAGA TTCTAGCTGC ATGTTGTATG ACATAAGAGG AGGAAGAATG GTACAAAGTT 2581 ATCATCCTCA TTCCAGTGAT GTTCGCTCTG TTCGATTCTC CCCTGGAGCT CACTACTTGC 2641 TAACAGGCTC TTATGATATG AAAATAAAGG TGACAGACCT ACAAGGGGAC CTCACCAAGC 2701 AGCTTCCTAT CATGGTGGTG GGGGAGCACA AGGACAAAGT GATTCAGTGC AGATGGCACA 2761 CCCAGGATCT TTCCTTCCTG TCATCCTCTG CAGATAGAAC TGTCACCCTC TGGACTTACA 2821 ATGGGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 2881 gttgcaacga ac