Construct: ORF ccsbBroadEn_07850

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005826.1_s300c1, BRDN0000389787
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CYFIP1 (23191)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001287810.4 99.9% 100% 918G>A
2 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324120.2 99.9% 100% 918G>A
3 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324123.3 99.9% 100% 918G>A
4 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_014608.6 99.9% 100% 918G>A
5 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324124.3 97.5% 97.6% 116_117ins90;828G>A
6 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324119.2 97.3% 97.3% 1_102del;1020G>A
7 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324126.3 97.2% 97.2% 282_283ins102;816G>A
8 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324125.3 90.2% 90.2% 0_1ins366;552G>A
9 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001033028.2 60.4% 56% (many diffs)
10 human 23191 CYFIP1 cytoplasmic FMR1 interactin... NM_001324122.3 55.3% 55.3% 0_1ins1680
11 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... NM_001164661.1 90.2% 99% (many diffs)
12 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... NM_011370.3 90.2% 99% (many diffs)
13 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... XM_006540729.2 90.2% 99% (many diffs)
14 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... NM_001164662.1 88.1% 96.4% (many diffs)
15 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... NM_001252459.1 79.2% 87.4% (many diffs)
16 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... NM_001252460.1 79.2% 87.4% (many diffs)
17 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... NM_133769.3 79.2% 87.4% (many diffs)
18 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... XM_006534461.3 77.6% 85.7% (many diffs)
19 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... XM_006534462.3 77.6% 85.7% (many diffs)
20 mouse 76884 Cyfip2 cytoplasmic FMR1 interactin... XM_006534463.2 77.6% 85.7% (many diffs)
21 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... XM_017322067.1 50% 54.6% (many diffs)
22 mouse 20430 Cyfip1 cytoplasmic FMR1 interactin... XR_001785497.1 46.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3825
ORF length:
3759
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCCCAGGTG ACTCTGGAGG ACGCGCTGTC CAACGTGGAC CTCCTGGAGG
121AGCTGCCCCT GCCCGACCAG CAGCCCTGCA TCGAGCCCCC GCCATCCTCG CTGCTCTACC
181AGCCAAATTT CAACACTAAC TTTGAAGACA GAAATGCATT TGTTACTGGC ATCGCAAGAT
241ACATTGAACA AGCCACCGTC CACTCTAGCA TGAACGAGAT GCTGGAGGAG GGCCAAGAAT
301ATGCTGTCAT GCTGTACACC TGGAGGAGCT GCTCCCGGGC CATCCCACAG GTGAAATGTA
361ACGAGCAGCC TAACAGAGTG GAAATCTACG AGAAAACCGT GGAGGTTCTG GAGCCTGAGG
421TCACAAAACT GATGAATTTC ATGTACTTCC AGAGAAATGC CATTGAGCGT TTCTGCGGGG
481AAGTGAGGCG CCTGTGCCAT GCCGAGAGGA GGAAGGACTT CGTGTCAGAA GCCTACCTGA
541TCACACTGGG CAAATTCATC AACATGTTCG CTGTGCTGGA CGAGCTGAAG AACATGAAGT
601GCAGTGTGAA GAACGACCAC TCAGCGTACA AGAGGGCCGC TCAGTTTTTA CGTAAAATGG
661CAGATCCACA GTCCATCCAG GAATCGCAGA ATCTGTCCAT GTTCCTGGCC AATCATAACA
721AGATCACACA GTCTCTGCAG CAGCAGCTCG AAGTGATTTC TGGCTACGAA GAGCTCCTGG
781CAGATATTGT GAATCTGTGT GTGGATTACT ACGAGAACAG GATGTATTTG ACGCCCAGTG
841AGAAACACAT GCTTCTCAAA GTCATGGGAT TTGGTCTGTA CCTGATGGAT GGGAGTGTCA
901GTAACATCTA TAAGTTGGAT GCCAAGAAAA GAATAAACTT ATCCAAAATC GACAAGTACT
961TCAAGCAACT CCAGGTGGTT CCACTATTTG GGGACATGCA AATAGAACTG GCAAGATATA
1021TCAAGACCAG CGCCCACTAC GAGGAAAATA AATCTCGATG GACGTGCACA TCCTCCGGCA
1081GCAGCCCTCA GTACAACATC TGCGAGCAGA TGATCCAGAT CCGCGAGGAC CACATGCGCT
1141TCATTTCGGA GCTGGCGCGC TACAGCAACA GCGAGGTGGT CACGGGCTCG GGCCGCCAGG
1201AGGCCCAGAA GACGGACGCG GAGTACCGCA AGCTCTTCGA CCTGGCGCTG CAGGGCCTGC
1261AGCTGTTGTC GCAGTGGAGC GCGCACGTGA TGGAAGTGTA TTCCTGGAAG CTTGTGCACC
1321CCACCGACAA GTACTCCAAC AAGGACTGCC CCGACAGCGC TGAAGAGTAC GAGCGTGCCA
1381CGCGCTACAA CTACACCAGC GAGGAGAAGT TTGCCCTAGT GGAGGTGATC GCCATGATCA
1441AAGGCCTGCA GGTGCTGATG GGCAGGATGG AGAGCGTGTT CAACCACGCC ATCCGGCACA
1501CCGTCTATGC CGCACTGCAG GACTTCTCCC AGGTGACCCT TAGGGAGCCG CTGCGGCAGG
1561CCATCAAGAA GAAGAAGAAC GTCATCCAGA GTGTCCTGCA GGCCATCAGG AAGACCGTGT
1621GTGACTGGGA GACGGGGCAT GAGCCCTTCA ATGACCCAGC CTTGCGGGGC GAGAAGGACC
1681CCAAGAGCGG CTTCGACATA AAAGTACCAC GCCGCGCCGT GGGACCCTCC AGCACTCAGC
1741TTTACATGGT GAGAACCATG CTAGAGTCCC TCATTGCAGA CAAAAGTGGT TCCAAGAAAA
1801CCTTGAGAAG TAGCCTTGAG GGGCCCACCA TATTGGACAT AGAAAAATTT CATCGAGAGT
1861CATTCTTCTA CACTCACTTG ATAAATTTCA GTGAAACGCT GCAGCAGTGC TGTGACCTTT
1921CGCAGCTGTG GTTCCGAGAG TTCTTCCTGG AGCTGACCAT GGGCAGGAGG ATCCAGTTCC
1981CCATTGAGAT GTCGATGCCC TGGATCCTGA CGGACCACAT CCTGGAGACC AAGGAGGCAT
2041CGATGATGGA GTACGTGCTC TACTCCCTGG ACCTGTACAA TGACAGCGCC CACTACGCGC
2101TCACCAGGTT CAACAAGCAG TTCCTGTACG ACGAAATTGA GGCCGAGGTG AATCTATGTT
2161TTGACCAATT TGTTTACAAG CTAGCAGACC AGATATTTGC CTATTATAAG GTTATGGCAG
2221GAAGTTTGCT TCTTGATAAA CGGTTACGAT CAGAATGCAA GAATCAGGGA GCCACGATCC
2281ACCTCCCGCC GTCTAACCGC TACGAGACGC TGCTGAAGCA GAGGCATGTG CAGCTCCTCG
2341GCAGATCAAT AGACCTCAAT CGTCTGATCA CCCAGCGCGT CTCAGCAGCC ATGTATAAGT
2401CCCTAGAACT GGCGATTGGA CGATTTGAAA GTGAAGATTT GACCTCCATA GTTGAGCTGG
2461ATGGCCTGTT GGAAATCAAC CGCATGACCC ACAAGCTGCT GAGCCGGTAC CTGACGCTGG
2521ACGGCTTCGA CGCCATGTTC CGGGAGGCCA ACCACAACGT GTCAGCGCCC TACGGGAGGA
2581TCACCCTGCA CGTCTTCTGG GAGCTCAACT ATGACTTCCT GCCCAACTAC TGCTACAACG
2641GCTCTACCAA CCGGTTTGTT CGGACAGTGT TACCATTTTC TCAGGAATTT CAAAGAGATA
2701AGCAGCCTAA TGCACAGCCT CAGTATCTGC ATGGATCCAA GGCTTTGAAC TTGGCCTACT
2761CCAGCATTTA CGGCAGCTAC CGGAACTTCG TGGGACCTCC ACACTTTCAA GTCATCTGCC
2821GGCTTCTCGG CTACCAGGGT ATCGCCGTGG TCATGGAGGA GCTGCTGAAG GTCGTCAAGA
2881GCCTGCTGCA AGGCACAATC CTGCAGTACG TGAAGACGCT GATGGAGGTG ATGCCCAAGA
2941TCTGCCGCCT GCCCCGGCAC GAGTACGGCT CTCCTGGTAT CCTGGAGTTC TTCCACCACC
3001AGCTGAAGGA CATCGTGGAG TACGCAGAGC TGAAGACGGT GTGCTTCCAG AACCTGCGGG
3061AGGTGGGGAA CGCCATCCTC TTCTGCCTGC TCATCGAGCA GAGCCTGTCT TTAGAAGAAG
3121TGTGTGACCT GCTGCACGCG GCTCCTTTCC AGAACATCTT GCCGCGAGTC CATGTGAAAG
3181AGGGGGAGAG ACTTGATGCC AAAATGAAAA GACTAGAATC AAAGTACGCC CCGCTGCATC
3241TTGTCCCACT GATTGAAAGA CTGGGGACCC CTCAGCAAAT TGCCATCGCA AGAGAGGGGG
3301ACCTGCTGAC AAAGGAGCGC CTCTGCTGCG GCCTGTCCAT GTTTGAGGTC ATCCTGACAC
3361GGATCCGGAG CTTTCTGGAT GACCCCATCT GGCGCGGGCC TCTGCCCAGC AATGGGGTCA
3421TGCATGTGGA CGAGTGTGTG GAGTTTCACA GACTGTGGAG TGCCATGCAG TTTGTCTACT
3481GCATTCCCGT GGGGACACAC GAGTTCACAG TCGAGCAGTG CTTTGGTGAT GGGCTACACT
3541GGGCTGGCTG TATGATCATC GTACTTCTTG GGCAGCAGCG GCGTTTTGCT GTGCTGGATT
3601TCTGCTACCA TCTACTTAAA GTCCAGAAAC ATGATGGCAA AGATGAGATT ATTAAAAATG
3661TGCCTTTGAA GAAGATGGTG GAGAGAATTC GCAAGTTCCA GATTCTCAAT GATGAGATCA
3721TCACCATCCT GGATAAGTAC CTGAAGTCAG GCGACGGGGA GGGCACGCCA GTGGAGCATG
3781TGCGCTGCTT CCAGCCGCCC ATCCACCAGT CCCTCGCCAG CAGCTGCCCA ACTTTCTTGT
3841ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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