Construct: ORF ccsbBroadEn_07853

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009420.1_s300c1, BRDN0000456578
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PMPCA (23203)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23203 PMPCA peptidase, mitochondrial pr... NM_015160.3 99.9% 100% 702C>T
2 human 23203 PMPCA peptidase, mitochondrial pr... XM_005266059.4 88% 83.7% (many diffs)
3 human 23203 PMPCA peptidase, mitochondrial pr... NM_001282946.1 80.8% 72.6% 0_1ins298;137_138insAG;402C>T
4 human 23203 PMPCA peptidase, mitochondrial pr... NM_001282944.1 74.9% 64.2% 0_1ins298;137_138ins95;309C>T
5 human 23203 PMPCA peptidase, mitochondrial pr... XM_017014543.2 65.2% 65.3% 0_1ins546;156C>T
6 human 23203 PMPCA peptidase, mitochondrial pr... XM_011518417.3 56.2% 52% (many diffs)
7 mouse 66865 Pmpca peptidase (mitochondrial pr... NM_173180.3 85.1% 91.2% (many diffs)
8 mouse 66865 Pmpca peptidase (mitochondrial pr... XM_006498237.3 60.5% 65.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1644
ORF length:
1575
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGCTGTG GTGCTGGCGG CGACGCGGTT GCTGCGGGGC TCGGGTTCTT
121GGGGCTGTTC GCGGCTGAGG TTTGGACCTC CTGCGTACAG ACGGTTTAGT AGTGGTGGTG
181CCTATCCCAA CATCCCCCTC TCTTCTCCCT TACCTGGAGT ACCCAAGCCT GTTTTTGCTA
241CAGTTGATGG ACAGGAAAAG TTTGAAACCA AAGTAACCAC ATTGGATAAT GGGCTTCGCG
301TGGCATCTCA GAATAAGTTT GGACAGTTTT GTACAGTAGG AATTCTTATC AATTCAGGAT
361CGAGATATGA AGCGAAATAC CTTAGTGGAA TTGCTCACTT TTTGGAAAAA TTGGCATTTT
421CGTCTACTGC TCGATTTGAC AGCAAAGATG AAATTCTGCT TACGTTGGAA AAGCATGGGG
481GTATCTGTGA CTGCCAGACA TCAAGAGACA CCACCATGTA TGCTGTGTCT GCTGATAGCA
541AAGGCTTGGA CACGGTGGTT GCCTTACTGG CTGATGTGGT TCTGCAGCCC CGGCTAACAG
601ATGAAGAAGT CGAGATGACG CGGATGGCGG TCCAGTTTGA GCTGGAGGAC CTGAACCTGC
661GGCCTGACCC AGAGCCACTT CTCACCGAGA TGATTCATGA AGCGGCTTAC AGGGAGAACA
721CAGTTGGCCT CCACCGTTTC TGCCCCACAG AAAACGTAGC AAAGATCAAT CGAGAGGTGC
781TGCATTCCTA CCTGAGGAAC TACTACACTC CCGACCGCAT GGTGCTGGCC GGCGTGGGCG
841TGGAGCACGA GCATCTGGTG GACTGTGCCC GGAAGTACCT CCTGGGGGTC CAGCCGGCCT
901GGGGGAGCGC AGAGGCCGTG GATATTGACA GATCTGTGGC CCAGTACACT GGGGGGATTG
961CCAAGCTAGA AAGAGACATG TCCAATGTCA GCCTGGGCCC GACCCCCATC CCCGAGCTCA
1021CGCACATCAT GGTTGGACTG GAGAGCTGCT CCTTCCTGGA GGAGGACTTC ATCCCCTTTG
1081CAGTGTTGAA CATGATGATG GGCGGAGGTG GCTCCTTCTC GGCTGGTGGG CCCGGCAAGG
1141GCATGTTCTC CAGGCTCTAC CTCAACGTGC TCAACAGGCA CCACTGGATG TATAACGCGA
1201CCTCCTACCA CCACAGCTAC GAGGACACTG GCCTCCTTTG CATCCATGCC AGCGCCGACC
1261CAAGACAGGT TCGAGAAATG GTAGAAATCA TCACAAAGGA GTTTATTTTA ATGGGCGGAA
1321CCGTGGACAC GGTGGAGCTG GAACGAGCCA AGACGCAGCT GACATCAATG CTCATGATGA
1381ACCTGGAATC CAGGCCTGTG ATCTTCGAGG ATGTGGGGAG GCAGGTGCTG GCCACTCGCT
1441CCAGAAAGCT GCCGCACGAG CTGTGCACGC TCATCCGCAA CGTGAAGCCG GAAGATGTGA
1501AGAGAGTCGC TTCTAAGATG CTCCGAGGGA AGCCGGCAGT GGCCGCCCTG GGTGACCTGA
1561CTGACCTGCC CACGTATGAG CACATCCAGA CCGCCCTGTC GAGTAAGGAC GGGCGCCTGC
1621CCAGGACGTA CCGGCTCTTC CGGTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa
1681agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)