Construct: ORF ccsbBroadEn_07865

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017804.1_s300c1, BRDN0000390403
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBR2 (23304)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23304 UBR2 ubiquitin protein ligase E3... NM_001184801.2 99.9% 100% 717T>C
2 human 23304 UBR2 ubiquitin protein ligase E3... XM_017010597.1 33.4% 32% (many diffs)
3 human 23304 UBR2 ubiquitin protein ligase E3... XR_001743285.1 28.5% (many diffs)
4 human 23304 UBR2 ubiquitin protein ligase E3... XM_017010596.1 24.5% 24.2% (many diffs)
5 human 23304 UBR2 ubiquitin protein ligase E3... NM_001363705.1 24.4% 24.2% (many diffs)
6 human 23304 UBR2 ubiquitin protein ligase E3... NM_015255.2 23.9% 23.4% (many diffs)
7 human 23304 UBR2 ubiquitin protein ligase E3... XM_017010595.1 23.6% 22.7% (many diffs)
8 human 23304 UBR2 ubiquitin protein ligase E3... XM_011514438.2 23.6% 22.6% (many diffs)
9 human 23304 UBR2 ubiquitin protein ligase E3... XM_017010594.1 23.1% 21.9% (many diffs)
10 human 23304 UBR2 ubiquitin protein ligase E3... XR_001743284.2 15.6% (many diffs)
11 mouse 224826 Ubr2 ubiquitin protein ligase E3... XR_001782069.1 40.2% (many diffs)
12 mouse 224826 Ubr2 ubiquitin protein ligase E3... NM_001177374.1 21.7% 22.6% (many diffs)
13 mouse 224826 Ubr2 ubiquitin protein ligase E3... NM_146078.3 20.8% 21.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1383
ORF length:
1317
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GTCGGAGCTA GAGCCAGAGG TGCAGGCCAT CGACCGGAGC TTGCTGGAAT
121GTTCGGCCGA GGAGATTGCG GGGAAATGGC TGCAAGCAAC TGACCTCACT AGAGAAGTGT
181ACCAGCATTT AGCCCACTAT GTACCCAAAA TCTACTGCAG GGGTCCCAAC CCTTTTCCAC
241AGAAAGAAGA CATGCTGGCA CAGCATGTTT TGTTGGGACC AATGGAATGG TACCTTTGTG
301GTGAAGATCC TGCATTTGGA TTTCCAAAAC TTGAGCAAGC AAACAAACCT TCTCATCTTT
361GTGGTCGTGT TTTTAAAGTA GGAGAGCCTA CATATTCTTG CAGAGACTGT GCAGTTGATC
421CAACTTGTGT TTTGTGCATG GAGTGCTTTT TGGGAAGTAT TCACAGAGAT CATCGATATA
481GGATGACAAC ATCAGGAGGT GGAGGTTTCT GTGACTGTGG TGATACTGAA GCCTGGAAAG
541AGGGTCCTTA CTGTCAAAAA CATGAACTTA ACACCTCTGA AATTGAGGAA GAAGAGGATC
601CTCTTGTTCA TTTATCAGAA GATGTGATAG CAAGAACTTA TAACATTTTT GCTATTACGT
661TTCGGTATGC AGTAGAAATA TTAACCTGGG AAAAAGAAAG TGAATTGCCA GCAGATTTAG
721AGATGGTAGA GAAGAGTGAC ACCTACTATT GCATGCTGTT TAATGATGAG GTTCACACCT
781ACGAACAAGT TATTTATACT CTTCAGAAAG CTGTTAACTG TACACAAAAA GAAGCTATTG
841GTTTTGCAAC TACAGTAGAT CGAGATGGGC GTAGGTCTGT TCGATATGGA GATTTTCAGT
901ATTGTGAGCA AGCAAAATCA GTAATTGTGA GAAATACCAG TAGACAGACA AAGCCACTCA
961AAGTTCAAGT TATGCATTCG TCTATTGTCG CACATCAGAA TTTTGGTTTG AAACTTTTGT
1021CTTGGCTGGG AAGTATTATT GGATATTCAG ATGGCCTTCG CCGGATTTTA TGTCAAGTTG
1081GTTTACAAGA AGGGCCAGAT GGTGAAAACT CTTCTCTAGT GGACAGACTG ATGCTTAGTG
1141ATTCCAAATT ATGGAAAGGT GCTAGGAGTG TATATCATCA GTTGTTCATG AGCAGTCTGC
1201TTATGGATTT GAAATACAAG AAACTATTTG CTGTTCGATT TGCAAAAAAC TATGAGCGTT
1261TGCAGAGTGA TTATGTGACA GATGACCACG ACAGAGAGTT TTCAGTCGCA GACCTCTCGG
1321TTCAGATATT CACGGTTCCT TCACTTTTCT CTATCTCTGC TGGGCGCAGT GGCTCACCTC
1381TGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1441gcaacgaac

Download FASTA (ORF) (Full)