Transcript: Mouse NM_001177374.1

Mus musculus ubiquitin protein ligase E3 component n-recognin 2 (Ubr2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Ubr2 (224826)
Length:
7696
CDS:
314..5581

Additional Resources:

NCBI RefSeq record:
NM_001177374.1
NBCI Gene record:
Ubr2 (224826)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177374.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000194615 GCCCATTGTTGGCAAAGGTAT pLKO.1 3833 CDS 100% 4.950 6.930 N Ubr2 n/a
2 TRCN0000194410 CCACCCATGTTGATAGAACAT pLKO.1 2246 CDS 100% 0.495 0.396 N Ubr2 n/a
3 TRCN0000175322 CCAGAAAGACAACAGGAAATA pLKO.1 5634 3UTR 100% 13.200 9.240 N Ubr2 n/a
4 TRCN0000293096 CCAGAAAGACAACAGGAAATA pLKO_005 5634 3UTR 100% 13.200 9.240 N Ubr2 n/a
5 TRCN0000217252 CCAGAGCAAAGCAAGTCAATT pLKO.1 6008 3UTR 100% 13.200 9.240 N Ubr2 n/a
6 TRCN0000216261 CCCATATTCTGATAGCATAAA pLKO.1 4198 CDS 100% 13.200 9.240 N Ubr2 n/a
7 TRCN0000215931 CTTTGAAAGCATTACTCAATT pLKO.1 6131 3UTR 100% 13.200 9.240 N Ubr2 n/a
8 TRCN0000194151 GACGAGGAAATCCTTTACATT pLKO.1 5439 CDS 100% 5.625 3.938 N Ubr2 n/a
9 TRCN0000298121 GACGAGGAAATCCTTTACATT pLKO_005 5439 CDS 100% 5.625 3.938 N Ubr2 n/a
10 TRCN0000194150 GCAGGTTTGCATGTATTGTTA pLKO.1 2168 CDS 100% 5.625 3.938 N Ubr2 n/a
11 TRCN0000298120 GCAGGTTTGCATGTATTGTTA pLKO_005 2168 CDS 100% 5.625 3.938 N Ubr2 n/a
12 TRCN0000173955 GCGTTACTTCCTGTGGTACAA pLKO.1 4451 CDS 100% 4.950 3.465 N Ubr2 n/a
13 TRCN0000298146 GCGTTACTTCCTGTGGTACAA pLKO_005 4451 CDS 100% 4.950 3.465 N Ubr2 n/a
14 TRCN0000194475 GCAACTACAGTTGATCGAGAT pLKO.1 1094 CDS 100% 4.050 2.835 N Ubr2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177374.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07865 pDONR223 100% 21.7% 22.6% None (many diffs) n/a
2 ccsbBroad304_07865 pLX_304 0% 21.7% 22.6% V5 (many diffs) n/a
3 TRCN0000475456 GTACCCCTTTTGGGTAAATGACCA pLX_317 44.4% 21.7% 22.6% V5 (many diffs) n/a
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