Construct: ORF ccsbBroadEn_07895

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012520.1_s300c1, BRDN0000397843
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPL13A (23521)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23521 RPL13A ribosomal protein L13a NM_012423.4 99.8% 100% 408C>T
2 human 728658 RPL13AP5 ribosomal protein L13a pseu... NR_026712.1 91.9% (many diffs)
3 human 644511 RPL13AP6 ribosomal protein L13a pseu... NR_026715.1 89.1% (many diffs)
4 human 387841 RPL13AP20 ribosomal protein L13a pseu... NR_003932.2 89% (many diffs)
5 human 23521 RPL13A ribosomal protein L13a NM_001270491.1 69.7% 69.9% 0_1ins183;225C>T
6 human 23521 RPL13A ribosomal protein L13a NR_073024.1 50% (many diffs)
7 human 645683 RPL13AP3 ribosomal protein L13a pseu... NR_004844.1 32.2% (many diffs)
8 mouse 22121 Rpl13a ribosomal protein L13A NM_009438.5 88.3% 95.5% (many diffs)
9 mouse 100504632 Gm11478 predicted gene 11478; 60S r... XR_141061.5 78% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
675
ORF length:
609
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAGGTGCAG GTCCTGGTGC TTGATGGTCG AGGCCATCTC CTGGGCCGCC
121TGGCGGCCAT CGTGGCTAAA CAGGTACTGC TGGGCCGGAA GGTGGTGGTC GTACGCTGTG
181AAGGCATCAA CATTTCTGGC AATTTCTACA GAAACAAGTT GAAGTACCTG GCTTTCCTCC
241GCAAGCGGAT GAACACCAAC CCTTCCCGAG GCCCCTACCA CTTCCGGGCC CCCAGCCGCA
301TCTTCTGGCG GACCGTGCGA GGTATGCTGC CCCACAAAAC CAAGCGAGGC CAGGCCGCTC
361TGGACCGTCT CAAGGTGTTT GACGGCATCC CACCGCCCTA CGACAAGAAA AAGCGGATGG
421TGGTTCCTGC TGCCCTCAAG GTCGTGCGTC TGAAGCCTAC AAGAAAGTTT GCTTATCTGG
481GGCGCCTGGC TCACGAGGTT GGCTGGAAGT ACCAGGCAGT GACAGCCACC CTGGAGGAGA
541AGAGGAAAGA GAAAGCCAAG ATCCACTACC GGAAGAAGAA ACAGCTCATG AGGCTACGGA
601AACAGGCCGA GAAGAACGTG GAGAAGAAAA TTGACAAATA CACAGAGGTC CTCAAGACCC
661ACGGACTCCT GGTCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
721tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)