Construct: ORF ccsbBroadEn_07905
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005034.1_s300c1, BRDN0000389892
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GTPBP4 (23560)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23560 | GTPBP4 | GTP binding protein 4 | NM_012341.3 | 99.9% | 100% | 750G>A |
| 2 | human | 23560 | GTPBP4 | GTP binding protein 4 | XM_024447921.1 | 66.9% | 67% | 0_1ins627;123G>A |
| 3 | mouse | 69237 | Gtpbp4 | GTP binding protein 4 | NM_027000.4 | 89% | 94.7% | (many diffs) |
| 4 | mouse | 69237 | Gtpbp4 | GTP binding protein 4 | XM_017315592.1 | 81% | 85.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1968
- ORF length:
- 1902
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGGC ACATTACAAC TTCAAGAAAA TTACGGTGGT GCCGTCCGCC AAGGACTTCA 121 TAGACCTCAC GTTGTCGAAG ACTCAACGAA AGACTCCAAC CGTTATTCAT AAACATTACC 181 AAATACATCG CATTAGACAT TTTTACATGA GAAAAGTCAA ATTTACTCAA CAGAATTACC 241 ATGATAGACT TTCACAAATT CTAACAGATT TCCCCAAATT GGATGATATT CATCCGTTCT 301 ATGCTGATTT GATGAATATT CTCTACGACA AGGATCATTA CAAGTTGGCT CTGGGGCAAA 361 TAAATATTGC CAAAAATTTA GTGGACAATG TTGCTAAAGA TTATGTGCGA CTGATGAAGT 421 ATGGCGACTC TCTCTACCGC TGCAAACAGC TGAAGCGTGC GGCCCTGGGA CGGATGTGCA 481 CAGTGATCAA GAGGCAGAAG CAGAGTTTGG AGTATTTGGA GCAAGTGCGT CAGCATTTAT 541 CCCGTTTGCC AACCATTGAT CCGAATACCA GGACCCTGCT TTTGTGTGGG TACCCAAATG 601 TTGGGAAGTC CAGCTTCATC AACAAGGTGA CGAGAGCAGA CGTGGATGTC CAGCCCTATG 661 CGTTCACAAC CAAGTCTCTG TTTGTTGGGC ACATGGATTA TAAGTATCTA CGTTGGCAGG 721 TTGTAGACAC TCCTGGGATC CTGGACCACC CTCTGGAGGA TAGGAACACC ATCGAGATGC 781 AGGCCATCAC TGCCCTGGCC CACCTCCGTG CTGCAGTCCT GTATGTGATG GATTTGTCTG 841 AGCAGTGTGG GCATGGGCTG AGGGAGCAGC TAGAACTCTT CCAGAACATC AGACCTCTCT 901 TCATCAACAA GCCTCTCATA GTTGTAGCCA ACAAATGTGA TGTGAAGAGA ATAGCTGAAC 961 TTTCTGAAGA TGATCAGAAA ATATTTACAG ATTTGCAGTC TGAAGGATTC CCTGTAATAG 1021 AGACCAGCAC CCTGACTGAG GAAGGTGTTA TTAAAGTTAA AACAGAGGCT TGCGATAGGC 1081 TTTTGGCTCA TCGAGTGGAA ACCAAAATGA AGGGAAATAA AGTGAATGAG GTGCTGAATA 1141 GACTGCACCT GGCTATCCCA ACCAGGAGGG ACGATAAGGA GAGGCCCCCT TTCATCCCTG 1201 AAGGAGTGGT GGCTCGCAGG AAGAGGATGG AAACTGAGGA GTCCAGGAAG AAGAGGGAAC 1261 GAGATCTTGA GCTGGAAATG GGAGATGATT ATATTTTGGA TCTTCAGAAG TACTGGGATT 1321 TAATGAATTT GTCTGAAAAA CATGATAAGA TACCAGAAAT CTGGGAAGGC CATAATATAG 1381 CTGATTATAT TGATCCAGCC ATCATGAAGA AATTGGAAGA ATTAGAAAAA GAAGAAGAGC 1441 TGAGAACAGC TGCTGGAGAG TATGACAGTG TATCTGAGAG TGAAGACGAA GAGATGCTGG 1501 AAATCCGACA GCTGGCAAAG CAAATTCGAG AGAAAAAGAA GTTGAAAATT CTGGAGTCCA 1561 AAGAAAAGAA TACACAGGGA CCCAGGATGC CGCGAACTGC TAAGAAGGTT CAGAGGACAG 1621 TTTTGGAGAA GGAGATGCGT AGTCTTGGTG TTGACATGGA CGATAAAGAC GATGCCCATT 1681 ACGCAGTCCA GGCAAGAAGA TCCCGGAGCA TCACTAGGAA AAGAAAGCGG GAAGACTCTG 1741 CTCCCCCGTC CTCTGTGGCC CGGAGTGGGA GTTGCTCTCG AACTCCACGT GACGTTTCTG 1801 GTCTTAGGGA TGTCAAGATG GTGAAGAAAG CCAAGACTAT GATGAAGAAT GCTCAGAAGA 1861 AGATGAATCG GTTGGGGAAG AAAGGGGAGG CGGATAGACA CGTGTTTGAT ATGAAGCCCA 1921 AGCACTTGCT GTCTGGGAAG AGGAAAGCTG GTAAAAAGGA CAGGAGATAC CCAACTTTCT 1981 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac