Construct: ORF ccsbBroadEn_07948
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013037.1_s300c1, BRDN0000386097
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULT4A1 (25830)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | NM_014351.4 | 99.7% | 99.6% | 378C>A;716A>G |
| 2 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XM_024452212.1 | 71.9% | 71.8% | 0_1ins237;141C>A;479A>G |
| 3 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XM_011530121.1 | 60% | 59.5% | 169_170ins339;377A>G |
| 4 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XM_011530120.3 | 59.7% | 59.8% | 378C>A;509delA;513_513delAins341 |
| 5 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XR_937839.3 | 59.1% | (many diffs) | |
| 6 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XR_937838.2 | 33.6% | (many diffs) | |
| 7 | human | 25830 | SULT4A1 | sulfotransferase family 4A ... | XR_001755207.1 | 33% | (many diffs) | |
| 8 | mouse | 29859 | Sult4a1 | sulfotransferase family 4A,... | NM_013873.3 | 91.3% | 97.5% | (many diffs) |
| 9 | mouse | 29859 | Sult4a1 | sulfotransferase family 4A,... | XM_006521065.3 | 81% | 80.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 918
- ORF length:
- 852
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGAGAGCGAG GCCGAGACCC CCAGCACCCC GGGGGAGTTC GAGAGCAAGT 121 ACTTCGAGTT CCATGGCGTG CGGCTGCCGC CCTTCTGCCG CGGGAAGATG GAGGAGATCG 181 CCAACTTCCC GGTGCGGCCC AGCGACGTGT GGATCGTCAC CTACCCCAAG TCCGGCACCA 241 GCTTGCTGCA GGAGGTGGTC TACTTGGTGA GCCAGGGCGC TGACCCCGAT GAGATCGGCT 301 TGATGAACAT CGACGAGCAG CTCCCGGTCC TGGAGTACCC ACAGCCGGGC CTGGACATCA 361 TCAAGGAACT GACCTCTCCC CGCCTCATCA AGAGCCACCT GCCCTACCGC TTTCTGCCCT 421 CTGACCTCCA CAATGGAGAC TCAAAGGTCA TCTATATGGC TCGCAACCCC AAGGATCTGG 481 TGGTGTCTTA TTATCAGTTC CACCGCTCTC TGCGGACCAT GAGCTACCGA GGCACCTTTC 541 AAGAATTCTG CCGGAGGTTT ATGAATGATA AGCTGGGCTA CGGCTCCTGG TTTGAGCACG 601 TGCAGGAGTT CTGGGAGCAC CGCATGGACT CGAACGTGCT TTTTCTCAAG TATGAAGACA 661 TGCATCGGGA CCTGGTGACG ATGGTGGAGC AGCTGGCCAG ATTCCTGGGG GTGTCCTGTG 721 ACAAGGCCCA GCTGGAAGCC CTGACGGAGC ACTGCCACCA GCTGGTGGAC CAGTGCTGCA 781 GCGCTGAGGC CCTGCCCGTG GGCCGGGGAA GAGTTGGGCT GTGGAAGGAC ATCTTCACCG 841 TCTCCATGAA TGAGAAGTTT GACTTGGTGT ATAAACAGAA GATGGGAAAG TGTGACCTCA 901 CGTTTGACTT TTATTTATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 961 gcttatcaat ttgttgcaac gaac