Construct: ORF ccsbBroadEn_07963
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004247.1_s300c1, BRDN0000392039
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANAPC15 (25906)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278487.2 | 99.7% | 100% | 174C>T |
| 2 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278488.1 | 99.7% | 100% | 174C>T |
| 3 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278489.2 | 99.7% | 100% | 174C>T |
| 4 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278490.2 | 99.7% | 100% | 174C>T |
| 5 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278491.1 | 99.7% | 100% | 174C>T |
| 6 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278492.1 | 99.7% | 100% | 174C>T |
| 7 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278493.1 | 99.7% | 100% | 174C>T |
| 8 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278494.1 | 99.7% | 100% | 174C>T |
| 9 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_014042.3 | 99.7% | 100% | 174C>T |
| 10 | human | 25906 | ANAPC15 | anaphase promoting complex ... | XM_017017496.1 | 99.7% | 100% | 174C>T |
| 11 | human | 25906 | ANAPC15 | anaphase promoting complex ... | XM_017017497.1 | 99.7% | 100% | 174C>T |
| 12 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278485.2 | 96.5% | 96.8% | 174C>T;317_328del |
| 13 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001278486.2 | 96.5% | 96.8% | 174C>T;317_328del |
| 14 | human | 25906 | ANAPC15 | anaphase promoting complex ... | NM_001330321.2 | 58.4% | 53.7% | (many diffs) |
| 15 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | NM_001291349.1 | 93.9% | 100% | (many diffs) |
| 16 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_011241935.2 | 93.9% | 100% | (many diffs) |
| 17 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | NM_001291352.1 | 86.1% | 91.6% | (many diffs) |
| 18 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | NM_001291353.1 | 86.1% | 91.6% | (many diffs) |
| 19 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | NM_027532.4 | 86.1% | 91.6% | (many diffs) |
| 20 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_017312359.1 | 86.1% | 91.6% | (many diffs) |
| 21 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | NM_001291348.1 | 80.6% | 85.8% | (many diffs) |
| 22 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_006508282.3 | 74% | 71.2% | (many diffs) |
| 23 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_006508284.3 | 74% | 71.2% | (many diffs) |
| 24 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_006508285.3 | 74% | 71.2% | (many diffs) |
| 25 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_017312358.1 | 74% | 71.2% | (many diffs) |
| 26 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_006508279.2 | 68.9% | 66.4% | (many diffs) |
| 27 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_006508280.3 | 68.9% | 66.4% | (many diffs) |
| 28 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_011241930.1 | 68.9% | 66.4% | (many diffs) |
| 29 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_011241931.2 | 68.9% | 66.4% | (many diffs) |
| 30 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_011241932.1 | 68.9% | 66.4% | (many diffs) |
| 31 | mouse | 75430 | Anapc15 | anaphase prompoting complex... | XM_011241933.1 | 68.9% | 66.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 429
- ORF length:
- 363
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CACTTTGTTC CCCTCACTCT TCCCTCGTGT GACTGAGACT CTGTGGTTTA 121 ATCTGGATCG ACCCTGTGTG GAAGAGACAG AGCTGCAGCA GCAGGAACAG CAGCATCAGG 181 CCTGGCTCCA AAGCATCGCG GAGAAAGACA ACAACCTGGT TCCTATTGGC AAGCCAGCTT 241 CAGAGCACTA TGATGACGAG GAAGAAGAGG ATGATGAAGA TGATGAGGAT AGTGAAGAGG 301 ACTCAGAGGA TGATGAGGAT ATGCAGGACA TGGACGAGAT GAATGACTAC AATGAGTCAC 361 CGGATGATGG AGAGGTCAAT GAGGTGGACA TGGAAGGCAA CGAACAGGAT CAGGACCAGT 421 GGATGATCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 481 tttgttgcaa cgaac