Construct: ORF ccsbBroadEn_07980

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015076.1_s300c1, BRDN0000394933
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPP1R16B (26051)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26051 PPP1R16B protein phosphatase 1 regul... NM_015568.4 99.9% 100% 750C>T
2 human 26051 PPP1R16B protein phosphatase 1 regul... NM_001172735.3 92.5% 92.5% 695_696ins126
3 human 26051 PPP1R16B protein phosphatase 1 regul... XM_011528768.3 91% 82.3% (many diffs)
4 human 26051 PPP1R16B protein phosphatase 1 regul... XM_011528769.2 64.8% 64.9% 0_1ins597;153C>T
5 human 26051 PPP1R16B protein phosphatase 1 regul... XM_017027785.1 64.8% 64.9% 0_1ins597;153C>T
6 mouse 228852 Ppp1r16b protein phosphatase 1, regu... NM_001159662.1 89.8% 96.3% (many diffs)
7 mouse 228852 Ppp1r16b protein phosphatase 1, regu... NM_153089.4 89.8% 96.3% (many diffs)
8 mouse 228852 Ppp1r16b protein phosphatase 1, regu... XM_011239492.2 89.8% 96.3% (many diffs)
9 mouse 228852 Ppp1r16b protein phosphatase 1, regu... XM_011239493.1 76.3% 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1770
ORF length:
1701
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCAGTCAC GTGGACCTGC TGACGGAGCT GCAGCTGCTG GAGAAGGTGC
121CCACGCTGGA GCGGCTGCGG GCTGCCCAGA AGCGCCGGGC CCAGCAGCTG AAGAAATGGG
181CACAGTACGA GCAGGACTTG CAGCACCGCA AGCGAAAGCA TGAGCGGAAG CGCAGCACGG
241GCGGCCGCCG CAAGAAAGTG TCCTTCGAGG CCAGCGTGGC CCTGCTGGAG GCCTCGCTGA
301GGAACGACGC CGAGGAAGTA CGCTACTTCC TGAAGAATAA GGTCAGCCCT GATTTGTGCA
361ATGAGGACGG ACTCACAGCC CTACACCAGT GCTGCATCGA CAACTTTGAG GAAATTGTGA
421AGCTGCTCCT CTCCCATGGT GCCAATGTGA ACGCCAAGGA CAACGAGCTG TGGACACCTC
481TCCATGCTGC AGCCACCTGC GGCCACATCA ACCTGGTGAA GATCCTCGTT CAGTATGGGG
541CCGACTTGCT TGCTGTCAAC TCGGATGGGA ACATGCCATA TGACCTCTGC GAGGATGAAC
601CCACCCTGGA TGTCATCGAG ACCTGCATGG CATACCAGGG CATCACCCAA GAGAAAATCA
661ACGAGATGCG GGTGGCTCCT GAGCAGCAGA TGATTGCGGA CATCCACTGC ATGATCGCAG
721CGGGCCAGGA CCTGGACTGG ATAGATGCCC AGGGTGCCAC ACTGCTGCAC ATAGCTGGAG
781CCAATGGATA CCTGCGGGCA GCTGAGCTCC TCCTGGATCA TGGAGTGCGT GTGGATGTGA
841AGGACTGGGA TGGCTGGGAG CCCCTGCATG CAGCTGCCTT CTGGGGACAG ATGCAGATGG
901CAGAGCTATT GGTGTCCCAT GGAGCTAGTC TCAGTGCAAG GACATCCATG GATGAGATGC
961CAATAGACCT GTGCGAGGAG GAAGAGTTCA AGGTCCTGCT GCTGGAGCTA AAACACAAGC
1021ATGATGTGAT CATGAAGTCA CAGCTGAGGC ACAAGTCATC CTTGAGCCGG AGGACCTCCA
1081GCGCAGGCAG CCGTGGGAAG GTGGTGCGGC GAGCCAGCCT GTCGGACAGG ACCAACCTGT
1141ATAGGAAGGA GTATGAGGGA GAGGCCATCC TGTGGCAGCG GAGTGCAGCT GAGGATCAGC
1201GGACCTCCAC CTACAACGGG GACATCAGGG AGACCAGGAC AGACCAAGAG AATAAGGACC
1261CTAACCCCAG GCTGGAGAAG CCCGTGCTAC TCTCCGAATT TCCTACCAAG ATCCCACGAG
1321GTGAACTGGA CATGCCTGTT GAGAATGGCC TCCGGGCTCC GGTCAGTGCC TACCAGTATG
1381CGCTGGCCAA CGGGGATGTC TGGAAGGTGC ATGAGGTGCC TGACTACAGC ATGGCCTATG
1441GCAACCCTGG CGTGGCCGAC GCCACCCCGC CCTGGAGCAG CTACAAGGAA CAGAGCCCTC
1501AGACGCTTCT GGAGCTGAAG CGGCAGCGGG CTGCAGCCAA GCTGCTCAGC CACCCCTTCC
1561TTAGCACACA CCTGGGCAGC AGCATGGCCA GGACGGGCGA GAGTAGCAGT GAAGGCAAGG
1621CCCCCTTGAT CGGAGGCAGA ACTTCACCGT ACAGCAGCAA TGGGACCTCG GTATATTACA
1681CGGTCACCAG CGGAGATCCC CCACTCTTAA AGTTCAAGGC CCCCATAGAG GAGATGGAGG
1741AGAAGGTGCA TGGCTGTTGC CGTATCTCCT TGCCAACTTT CTTGTACAAA GTtggcatta
1801taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)