Construct: ORF ccsbBroadEn_08048

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003219.1_s300c1, BRDN0000395719
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UTP25 (27042)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27042 UTP25 UTP25 small subunit process... NM_014388.7 99.9% 100% 144A>G
2 human 27042 UTP25 UTP25 small subunit process... XM_006711275.4 74.7% 73.6% (many diffs)
3 human 27042 UTP25 UTP25 small subunit process... XM_011509418.3 62.3% 62.3% 0_1ins855
4 mouse 215193 Diexf digestive organ expansion f... NM_145415.2 84.2% 86.8% (many diffs)
5 mouse 215193 Diexf digestive organ expansion f... XR_373895.2 71.9% (many diffs)
6 mouse 215193 Diexf digestive organ expansion f... XR_001783764.1 68.7% (many diffs)
7 mouse 215193 Diexf digestive organ expansion f... XM_006497250.1 55% 59.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CAAACGCGGG AGCCGGAGCC AGAGCCAGCT ACTCAACACC CTAACTAAAA
121AGCAGAAGAA ACATCTTCGA GATTTCGGCG AGGAGCATCC CTTCTATGAC AGGGTTTCCA
181GAAAGGAAGC AAAGCCACAG ATTTGTCAGC TGTCAGAGAG TTCAGATTCT TCAGATTCTG
241AAAGCGACTC AGAGAGTGAA CCACAACAAG TTTCTGGCTA CCACAGACTA CTTGCTACAT
301TAAAGAATGT TTCTGAGGAA GAAGAGGAAG ATGAGGAGGA GGAAGAGGAA GAAGACAGTA
361TTGTAGATGA TGCAGAAATG AACGATGAAG ATGGTGGTAG CGATGTCAGT GTGGAAGAAG
421AGATGGCTGC AGAGTCTACT GAAAGTCCAG AGAATGTAGC TTTATCTGCT GACCCTGAGG
481GAAAAGAAGA TGGGGAAGAG CCACCGGGCA CATCACAAAC ATCCCCCGAA GAGTTCACAG
541ATGCAAAACA CGAGTCACTG TTCAGCCTGG AAACCAATTT TCTGGAAGAG GAAAGTGGAG
601ACAACTCTTC TTTGAAAGCC TCTCAAGATC CATTTCTTCA ACATGTGAAC AAAGAACTGA
661AAGAAAAAGC AATTCAGGCT GTTGCCACAA ATCCCAAAAC TACCCACGAG CTTAAATGGC
721CTATTCTGGG CCAGCTTTTC TTTTCCTCTA AGTTTCAGAA GTTGGAAACA TTTAAACCCC
781CAAAGGATAT TGACTTAAAG TCACTTCATC TCCAGAAGCC TCTGGAATCC ACCTGGACTA
841AGACCAACAG CCAGTTCCTA TCTGGTCCCC AAAAATCAAG CAGCCCATTC ACCCCCCTCC
901AGAAAGAACT CTTCTTAATT ATGAATTCTT ACCGGGACCT GTTCTACCCG GAAAGGACTG
961CTCTGAAGAA CGGGGAAGAG ATCCGCCATG TGTATTGCCT GCATGTGATA AATCACATCC
1021TCAAAGCCAA TGCCCAGGTG CTTGGCAACA ATAGCAGACG CCGAAGCCAG AAGTTTGGAG
1081TGGGTGATGA TGATGACTTC AGAGACCAAG GGTTAACAAG GCCCAAGGTA CTGATAGTGG
1141TGCCATTCCG GGAAGCTGCT TTGCGGGTGG TGCAGCTCTT CATCAGCCTC CTCGAGGGTG
1201ACAGCAAGAA GAAAATCATT GTGAGCAACA AAAAGAGGTT TCAGGGAGAA TATGGATCAG
1261ATCCCGAGGA GAGACCACCC AACTTGAAGA GGCCTGAGGA TTATGAAGCC GTATTTGTGG
1321GCAATATTGA TGACCACTTC AGGATTGGAG TGGCAATACT TCAGAGAAGC ATCCGACTCT
1381ATGCCCCGTT TTACTCCTCG GATATCCTCA TTGCTTCCCC CCTGGGCTTG AGGACCATCA
1441TTGGTGGAGA AGGAGAGAAG AAGAGAGATT TTGACTTTCT GTCTTCTATC GAGCTTCTCA
1501TCATTGATCA AGCTGACATT TACCTGATGC AGAACTGGGA GCATGTCCTG CATTTGATGA
1561ATCACATGAA CCTACTACCC CTGGACTCAC ATGGGGTAGA CTTTTCTCGA GTGCGGATGT
1621GGAGCCTCAA TAATTGGTCC AAGTACTATC GCCAGACACT GCTATTTGGG GCCCTTCAGG
1681ATGCCCAGAT CAACTCAGTG TTCAACAAGT ACTGTGTCAA CATGCAAGGC CAGGTGGCCG
1741TGAGGAATGT CCCAATGACA GGCTCTATCA GTCATGTCCT GGTGCAGCTC CCACATGTCT
1801TCCAGAGGAT GGAAGCTGAA AACCTAGCTT CAGTGATTGA TGCCAGGTTT AACTTTTTTG
1861TGAACAAGAT TTTGCCACAG TATCGTGATG CAGTCATGTC TCACACGCTC ATCTATATCC
1921CCTCCTACTT TGACTTCGTG CGTCTTCGAA ATTACTTCAA GAAGGAGGAA TTGAATTTTA
1981CCCACATCTG CGAGTACACG CAGAAGTCTG GTGTCTCCAG GGCCAGACAC TTCTTCCTTC
2041AAGGAGAGAA ACAGTTTCTA CTTTTCACAG AGCGCTTCCA TTTCTACAAA AGGTATACAA
2101TAAAAGGCAT CAGGAACCTG ATTTTCTATG AACTGCCGAC ATATCCACAC TTTTACAGTG
2161AAATCTGTAA TATGCTGAGA GCCACCAACA GAGGAGAAGA GGCCACGTGG ACCTGCACTG
2221TTCTCTACTC CAAATATGAT GCCCAGAGGT TAGCTGCCGT GGTTGGTGTG GAGCGGGCGG
2281CACAGATGCT ACAGTCCAAC AAGAATGTCC ACCTCTTCAT TACTGGAGAA AAATGCCCAA
2341CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.