Construct: ORF ccsbBroadEn_08291

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015751.1_s300c1, BRDN0000393131
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HPCAL4 (51440)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51440 HPCAL4 hippocalcin like 4 NM_001282396.1 99.6% 98.9% 11C>N;535C>G
2 human 51440 HPCAL4 hippocalcin like 4 NM_016257.4 99.6% 98.9% 11C>N;535C>G
3 human 51440 HPCAL4 hippocalcin like 4 XM_017001447.1 99.6% 98.9% 11C>N;535C>G
4 human 7447 VSNL1 visinin like 1 NM_001366803.1 80.6% 89% (many diffs)
5 human 7447 VSNL1 visinin like 1 NM_001366806.1 80.6% 89% (many diffs)
6 human 7447 VSNL1 visinin like 1 NM_003385.5 80.6% 89% (many diffs)
7 human 51440 HPCAL4 hippocalcin like 4 NM_001282397.1 61.9% 61.2% 11C>N;160_161ins216;319C>G
8 mouse 170638 Hpcal4 hippocalcin-like 4 NM_174998.4 93.1% 98.9% (many diffs)
9 mouse 26950 Vsnl1 visinin-like 1 NM_012038.4 82.3% 89% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
639
ORF length:
573
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GAAGANCAAC AGCAAGCTGG CCCCCGAGGT GCTGGAGGAC CTTGTTCAGA
121ACACTGAGTT CAGCGAGCAG GAGCTGAAGC AGTGGTACAA GGGCTTCCTG AAGGACTGCC
181CCAGCGGCAT CCTCAACCTG GAGGAGTTTC AGCAGCTCTA CATCAAGTTC TTCCCCTACG
241GCGACGCCTC CAAGTTCGCG CAGCACGCTT TCCGCACCTT CGACAAGAAC GGCGACGGCA
301CCATCGACTT CCGGGAGTTC ATCTGCGCCC TGTCGGTCAC CTCCCGCGGC AGCTTCGAGC
361AGAAGCTCAA CTGGGCCTTT GAGATGTACG ACCTGGACGG CGACGGGCGC ATCACGCGCC
421TGGAGATGCT GGAGATCATC GAGGCAATCT ACAAGATGGT GGGCACCGTG ATCATGATGC
481GCATGAACCA GGACGGGCTC ACGCCCCAGC AGCGTGTGGA CAAGATCTTC AAGAAGATGG
541ACCAGGATAA GGACGACCAG ATTACATTGG AGGAGTTCAA GGAGGCAGCC AAGAGTGACG
601CATCCATTGT GTTGCTGCTG CAGTGTGACA TGCAGAAGTA CCCAACTTTC TTGTACAAAG
661Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)