Construct: ORF ccsbBroadEn_08326

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018471.1_s300c1, BRDN0000456644
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIGT (51604)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51604 PIGT phosphatidylinositol glycan... NM_015937.6 99.8% 100% 1371G>A;1620T>C
2 human 51604 PIGT phosphatidylinositol glycan... NM_001184728.3 90.1% 90.3% 324_325ins168;1203G>A;1452T>C
3 human 51604 PIGT phosphatidylinositol glycan... NM_001184729.3 88.2% 88.2% 1033_1034ins201;1170G>A;1419T>C
4 human 51604 PIGT phosphatidylinositol glycan... NM_001184730.3 82.2% 82.3% 186_187ins306;1065G>A;1314T>C
5 human 51604 PIGT phosphatidylinositol glycan... NR_047691.2 78% (many diffs)
6 human 51604 PIGT phosphatidylinositol glycan... NR_047693.2 75.2% (many diffs)
7 human 51604 PIGT phosphatidylinositol glycan... NR_047692.2 72.9% (many diffs)
8 human 51604 PIGT phosphatidylinositol glycan... NR_047694.2 71.6% (many diffs)
9 human 51604 PIGT phosphatidylinositol glycan... NR_047695.2 61.1% (many diffs)
10 mouse 78928 Pigt phosphatidylinositol glycan... NM_133779.2 87% 93.4% (many diffs)
11 mouse 78928 Pigt phosphatidylinositol glycan... XM_006500421.3 87% 93.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1800
ORF length:
1734
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCGGCTATG CCGCTTGCTC TGCTCGTCCT GTTGCTCCTG GGGCCCGGCG
121GCTGGTGCCT TGCAGAACCC CCACGCGACA GCCTGCGGGA GGAACTTGTC ATCACCCCGC
181TGCCTTCCGG GGACGTAGCC GCCACATTCC AGTTCCGCAC GCGCTGGGAT TCGGAGCTTC
241AGCGGGAAGG AGTGTCCCAT TACAGGCTCT TTCCCAAAGC CCTGGGGCAG CTGATCTCCA
301AGTATTCTCT ACGGGAGCTG CACCTGTCAT TCACACAAGG CTTTTGGAGG ACCCGATACT
361GGGGGCCACC CTTCCTGCAG GCCCCATCAG GTGCAGAGCT GTGGGTCTGG TTCCAAGACA
421CTGTCACTGA TGTGGATAAA TCTTGGAAGG AGCTCAGTAA TGTCCTCTCA GGGATCTTCT
481GCGCCTCTCT CAACTTCATC GACTCCACCA ACACAGTCAC TCCCACTGCC TCCTTCAAAC
541CCCTGGGTCT GGCCAATGAC ACTGACCACT ACTTTCTGCG CTATGCTGTG CTGCCGCGGG
601AGGTGGTCTG CACCGAAAAC CTCACCCCCT GGAAGAAGCT CTTGCCCTGT AGTTCCAAGG
661CAGGCCTCTC TGTGCTGCTG AAGGCAGATC GCTTGTTCCA CACCAGCTAC CACTCCCAGG
721CAGTGCATAT CCGCCCTGTT TGCAGAAATG CACGCTGTAC TAGCATCTCC TGGGAGCTGA
781GGCAGACCCT GTCAGTTGTA TTTGATGCCT TCATCACGGG GCAGGGAAAG AAAGACTGGT
841CCCTCTTCCG GATGTTCTCC CGAACCCTCA CGGAGCCCTG CCCCCTGGCT TCAGAGAGCC
901GAGTCTATGT GGACATCACC ACCTACAACC AGGACAACGA GACATTAGAG GTGCACCCAC
961CCCCGACCAC TACATATCAG GACGTCATCC TAGGCACTCG GAAGACCTAT GCCATCTATG
1021ACTTGCTTGA CACCGCCATG ATCAACAACT CTCGAAACCT CAACATCCAG CTCAAGTGGA
1081AGAGACCCCC AGAGAATGAG GCCCCCCCAG TGCCCTTCCT GCATGCCCAG CGGTACGTGA
1141GTGGCTATGG GCTGCAGAAG GGGGAGCTGA GCACACTGCT GTACAACACC CACCCATACC
1201GGGCCTTCCC GGTGCTGCTG CTGGACACCG TACCCTGGTA TCTGCGGCTG TATGTGCACA
1261CCCTCACCAT CACCTCCAAG GGCAAGGAGA ACAAACCAAG TTACATCCAC TACCAGCCTG
1321CCCAGGACCG GCTGCAACCC CACCTCCTGG AGATGCTGAT TCAGCTGCCG GCCAACTCAG
1381TCACCAAGGT TTCCATCCAG TTTGAGCGGG CGCTGCTGAA GTGGACCGAG TACACACCAG
1441ATCCTAACCA TGGCTTCTAT GTCAGCCCAT CTGTCCTCAG CGCCCTTGTG CCCAGCATGG
1501TAGCAGCCAA GCCAGTGGAC TGGGAAGAGA GTCCCCTCTT CAACAGCCTG TTCCCAGTCT
1561CTGATGGCTC TAACTACTTT GTGCGGCTCT ACACGGAGCC GCTGCTGGTG AACCTGCCGA
1621CACCGGACTT CAGCATGCCC TACAACGTGA TCTGCCTCAC GTGCACTGTG GTGGCCGTGT
1681GCTACGGCTC CTTCTACAAT CTCCTCACCC GAACCTTCCA CATCGAGGAG CCCCGCACAG
1741GTGGCCTGGC CAAGCGGCTG GCCAACCTTA TCCGGCGCGC CCGAGGTGTC CCCCCACTCT
1801GCCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca
1861acgaac

Download FASTA (ORF) (Full)

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