Construct: ORF ccsbBroadEn_08419

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012182.1_s300c1, BRDN0000390266
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAQR5 (54852)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54852 PAQR5 progestin and adipoQ recept... NM_001104554.1 99.8% 99.6% 71T>C
2 human 54852 PAQR5 progestin and adipoQ recept... NM_017705.4 99.8% 99.6% 71T>C
3 human 54852 PAQR5 progestin and adipoQ recept... XM_011521720.2 99.8% 99.6% 71T>C
4 human 54852 PAQR5 progestin and adipoQ recept... XM_017022360.1 99.8% 99.6% 71T>C
5 human 54852 PAQR5 progestin and adipoQ recept... XM_017022361.1 99.8% 99.6% 71T>C
6 human 54852 PAQR5 progestin and adipoQ recept... XM_017022362.1 99.8% 99.6% 71T>C
7 human 54852 PAQR5 progestin and adipoQ recept... XM_017022363.1 99.8% 99.6% 71T>C
8 human 54852 PAQR5 progestin and adipoQ recept... XM_017022364.1 99.8% 99.6% 71T>C
9 human 54852 PAQR5 progestin and adipoQ recept... XM_024449966.1 99.8% 99.6% 71T>C
10 human 54852 PAQR5 progestin and adipoQ recept... XM_005254495.4 95.4% 94.8% (many diffs)
11 human 54852 PAQR5 progestin and adipoQ recept... XM_011521723.2 86.6% 86.6% 0_1ins132
12 human 54852 PAQR5 progestin and adipoQ recept... XM_024449967.1 68.5% 50.2% (many diffs)
13 human 54852 PAQR5 progestin and adipoQ recept... XM_011521725.2 66.2% 66% 71T>C;178_179ins333
14 human 54852 PAQR5 progestin and adipoQ recept... XM_017022366.1 65.1% 60.8% 0_1ins139;39_40ins206
15 human 54852 PAQR5 progestin and adipoQ recept... XM_011521727.2 64.4% 60.5% 71T>C;608_609ins142;639_640ins209
16 human 54852 PAQR5 progestin and adipoQ recept... XM_017022368.1 53% 53% 0_1ins132;46_47ins333
17 mouse 74090 Paqr5 progestin and adipoQ recept... NM_028748.2 88.2% 91.2% (many diffs)
18 mouse 74090 Paqr5 progestin and adipoQ recept... XM_006511508.3 84.4% 86.9% (many diffs)
19 mouse 74090 Paqr5 progestin and adipoQ recept... XM_006511509.2 70.6% 72.4% (many diffs)
20 mouse 74090 Paqr5 progestin and adipoQ recept... XM_006511510.2 57.2% 55.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1056
ORF length:
990
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GAGCCTGAAG CTCCCCAGGC TGTTTAGCAT AGACCAGATA CCCCAGGTGT
121TCCATGAGCA AGGCACCCTG TTCGGCTACC GCCATCCACA GAGTTCTGCC ACTGCCTGCA
181TCCTCAGCCT TTTCCAAATG ACCAATGAGA CTCTCAACAT TTGGACTCAC TTGCTGCCCT
241TCTGGTTCTT TGCATGGAGG TTTGTGACTG CACTGTATAT GACAGACATC AAGAATGACA
301GCTACTCCTG GCCCATGCTT GTGTACATGT GCACCAGCTG CGTGTACCCA CTTGTGTCCA
361GCTGTGCGCA CACCTTCAGC TCTATGTCCA AGAATGCCCG GCACATTTGC TACTTCCTGG
421ACTATGGTGC CGTCAACCTC TTCAGCCTGG GCTCAGCCAT TGCCTACTCT GCATACACGT
481TCCCGGATGC GCTCATGTGC ACCACTTTCC ATGACTACTA CGTGGCCCTG GCTGTACTGA
541ACACCATCCT CAGCACAGGC CTCTCCTGCT ACTCCAGGTT TCTTGAAATC CAGAAGCCCA
601GACTCTGTAA GGTGATTCGT GTCCTCGCCT TTGCTTATCC GTACACCTGG GACTCCCTCC
661CCATCTTCTA CAGGCTATTC CTGTTCCCAG GGGAGAGTGC ACAAAATGAA GCCACCTCGT
721ACCACCAGAA GCACATGATC ATGACCCTCC TGGCCTCTTT CTTGTACTCT GCACATCTGC
781CAGAACGCCT AGCCCCTGGA CGCTTTGACT ACATCGGTCA CAGTCACCAG CTGTTTCACG
841TGTGTGTGAT CCTGGCCACG CACATGCAGA TGGAAGCCAT ACTTCTGGAC AAGACTCTGA
901GGAAGGAATG GCTCCTGGCC ACCTCCAAGC CCTTCTCTTT CTCTCAGATA GCTGGAGCCA
961TACTTCTGTG CATCATCTTC AGCCTCAGCA ACATAATTTA TTTCTCAGCT GCTCTGTATC
1021GGATTCCCAA GCCAGAATTA CATAAAAAAG AAACATGCCC AACTTTCTTG TACAAAGTtg
1081gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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