Construct: ORF ccsbBroadEn_08453
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001523.1_s300c1, BRDN0000386381
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PPP2R3C (55012)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | NM_017917.3 | 99.9% | 99.7% | 1350T>N |
| 2 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | XM_005267782.4 | 99.9% | 99.7% | 1350T>N |
| 3 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | XM_024449638.1 | 93% | 92.9% | 0_1ins93;1257T>N |
| 4 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | XM_017021388.2 | 89.7% | 89.6% | 974_975ins138;1212T>N |
| 5 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | XM_024449639.1 | 88.1% | 84.9% | (many diffs) |
| 6 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | NM_001305155.1 | 75.6% | 75.4% | 0_1ins330;1020T>N |
| 7 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | NM_001305156.1 | 75.6% | 75.4% | 0_1ins330;1020T>N |
| 8 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | XR_002957558.1 | 63.5% | (many diffs) | |
| 9 | human | 55012 | PPP2R3C | protein phosphatase 2 regul... | NR_130972.1 | 55.5% | (many diffs) | |
| 10 | mouse | 59032 | Ppp2r3c | protein phosphatase 2, regu... | NM_021529.3 | 90.2% | 98% | (many diffs) |
| 11 | mouse | 59032 | Ppp2r3c | protein phosphatase 2, regu... | XR_381536.2 | 50.8% | (many diffs) | |
| 12 | mouse | 100039815 | Gm2436 | predicted gene 2436 | XM_017315320.1 | 35% | 37.3% | (many diffs) |
| 13 | mouse | 100039830 | Gm2446 | predicted gene 2446 | XM_017315322.1 | 35% | 37.3% | (many diffs) |
| 14 | mouse | 100039815 | Gm2436 | predicted gene 2436 | XM_017315321.1 | 32.7% | 35% | (many diffs) |
| 15 | mouse | 100039830 | Gm2446 | predicted gene 2446 | XM_017315323.1 | 32.7% | 35% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1425
- ORF length:
- 1359
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTGGAAAGAA GTTCTTCGTC GGCGCCTAGC GACGCCCAAC ACCTGTCCAA 121 ACAAAAAAAA AAGTGAACAA GAATTAAAAG ATGAAGAAAT GGATTTATTT ACAAAATATT 181 ACTCCGAATG GAAAGGAGGT AGAAAAAACA CAAATGAATT CTATAAGACC ATTCCCCGGT 241 TTTATTATAG GCTGCCTGCT GAAGATGAAG TCTTACTACA GAAATTAAGA GAGGAATCAA 301 GAGCTGTCTT TCTACAAAGA AAAAGCAGAG AACTGTTAGA TAATGAAGAA TTACAGAACT 361 TATGGTTTTT GCTGGACAAA CACCAGACAC CACCTATGAT TGGAGAGGAA GCGATGATCA 421 ATTACGAAAA CTTTTTGAAG GTTGGTGAAA AGGCTGGAGC AAAGTGCAAG CAATTTTTCA 481 CAGCAAAAGT CTTTGCTAAA CTCCTTCATA CAGATTCATA TGGAAGAATT TCCATCATGC 541 AGTTCTTTAA TTATGTCATG AGAAAAGTTT GGCTTCATCA AACAAGAATA GGACTCAGTT 601 TATATGATGT CGCTGGGCAG GGGTACCTTC GGGAATCTGA TTTAGAAAAC TACATATTGG 661 AACTTATCCC TACGTTGCCA CAATTAGATG GTCTGGAAAA ATCTTTCTAC TCCTTTTATG 721 TTTGTACAGC AGTTAGGAAG TTCTTCTTCT TTTTAGATCC TTTAAGAACA GGAAAGATAA 781 AAATTCAAGA TATTTTAGCA TGCAGCTTCC TAGATGATTT ATTGGAGCTA AGGGATGAGG 841 AACTGTCCAA GGAGAGTCAA GAAACAAATT GGTTTTCTGC TCCTTCTGCC CTAAGAGTTT 901 ATGGCCAGTA CTTGAATCTT GATAAAGATC ACAATGGCAT GCTCAGTAAA GAAGAACTCT 961 CACGCTATGG AACAGCTACC ATGACCAATG TCTTCTTAGA CCGTGTTTTC CAGGAGTGTC 1021 TCACTTATGA TGGAGAAATG GACTATAAGA CCTACTTGGA CTTTGTCCTT GCATTAGAAA 1081 ACAGAAAGGA ACCTGCAGCT CTACAATATA TTTTCAAACT GCTTGATATT GAGAACAAAG 1141 GATACCTGAA TGTCTTTTCA CTTAATTATT TCTTTAGGGC CATACAGGAA CTAATGAAAA 1201 TCCATGGACA AGATCCTGTT TCATTTCAAG ATGTCAAGGA TGAAATCTTT GACATGGTAA 1261 AACCAAAGGA TCCTTTGAAA ATCTCTCTTC AGGATTTAAT CAACAGTAAT CAAGGAGACA 1321 CAGTAACCAC CATTCTAATC GATTTGAATG GCTTCTGGAC TTACGAGAAC AGAGAGGCTC 1381 TTGTTGCAAA TGACAGTGAA AACTCTGCAG ACCTNGATGA TACATGCCCA ACTTTCTTGT 1441 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c