Construct: ORF ccsbBroadEn_08506
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010591.1_s300c1, BRDN0000457088
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC36 (55282)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55282 | LRRC36 | leucine rich repeat contain... | NM_018296.6 | 99.9% | 99.8% | 127G>A |
| 2 | human | 55282 | LRRC36 | leucine rich repeat contain... | XR_243416.2 | 88% | (many diffs) | |
| 3 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_017023400.2 | 86.9% | 85.9% | (many diffs) |
| 4 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_005256025.2 | 85.7% | 85.2% | (many diffs) |
| 5 | human | 55282 | LRRC36 | leucine rich repeat contain... | NM_001161575.1 | 82.9% | 82.1% | (many diffs) |
| 6 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_005256026.2 | 80.4% | 80.3% | 127G>A;753_754ins441 |
| 7 | human | 55282 | LRRC36 | leucine rich repeat contain... | XR_429723.1 | 79.7% | (many diffs) | |
| 8 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_005256027.2 | 78.7% | 72.9% | 127G>A;1659_1660ins146;1782_1783ins334 |
| 9 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523200.1 | 78.7% | 72.9% | 127G>A;1659_1660ins146;1782_1783ins334 |
| 10 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_005256028.1 | 77.7% | 77.7% | 0_1ins504 |
| 11 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523201.1 | 77.7% | 77.7% | 0_1ins504 |
| 12 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523202.2 | 77.5% | 77.5% | 68_69ins507 |
| 13 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523203.1 | 72.6% | 72.5% | 127G>A;576_577ins618 |
| 14 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523204.1 | 67.9% | 67.9% | 0_1ins726 |
| 15 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523205.1 | 67.9% | 67.9% | 0_1ins726 |
| 16 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_024450338.1 | 67.9% | 67.9% | 0_1ins726 |
| 17 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_011523206.3 | 66.2% | 66% | (many diffs) |
| 18 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_017023401.1 | 60.3% | 56.5% | 127G>A;753_754ins751;908_909ins146 |
| 19 | human | 55282 | LRRC36 | leucine rich repeat contain... | XM_017023402.1 | 52.4% | 48.7% | 127G>A;576_577ins928;731_732ins146 |
| 20 | mouse | 270091 | Lrrc36 | leucine rich repeat contain... | XM_006531055.2 | 84.4% | 80.6% | (many diffs) |
| 21 | mouse | 270091 | Lrrc36 | leucine rich repeat contain... | NM_001170788.1 | 84.2% | 80.4% | (many diffs) |
| 22 | mouse | 270091 | Lrrc36 | leucine rich repeat contain... | XM_006531056.2 | 83.9% | 80.1% | (many diffs) |
| 23 | mouse | 270091 | Lrrc36 | leucine rich repeat contain... | XM_006531057.2 | 81.5% | 73% | (many diffs) |
| 24 | mouse | 270091 | Lrrc36 | leucine rich repeat contain... | XR_387748.2 | 78.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2331
- ORF length:
- 2262
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGAGCAA TGGGAGCTGG ACGAGGAAGG CATTCGCCGC CTGGGGGCGC 121 TGACGCTGGA GCAGCCGGAA CTGGTGGAGT CTCTTTCATT GCAGGGATCT TATGCTGGCA 181 AAATCCATTC CATTAGTGAT GCCTTCAGAA ATTTTAAAAA TCTCCGATCC TTAGATTTAT 241 CAAGGAATTT GATCACTAGC CTTAAGGGAA TCCAGTATTT ATGTTCACTC CAAGACCTGA 301 ATTTATATTA TAACAACATT CCTTCATTAG TGGAAGTGTC CCGTCTACAA CCGTTACCCT 361 TCCTCAAAGA ACTGGATTTG AGACTTAATC CTGTTGTAAG GAAAGATACA GATTATAGGC 421 TCTTTGCTGT ATATACACTA CAAACTCTGG AGAAATTAGA TGACCGAACT GTACGTGAAG 481 GTGAGAGAAA AGCTGCCAAG CTGCATTTTA GTCAGTTGGG CAACAGTGAA AATTTTCTTT 541 TAGAGGTGGA AAAAAGCTCT AGGGAGAAGA CAATGAAAAA CTGTGTAACA GGTGAGAGCT 601 CTGCATCAAA AGTCAGTGCT AATGTTGACA GCAGGATTGA AATGGACTCA AACAAAGGAC 661 TTTTTATTCC CTTCCCCAAC CGGGAAATAA AGGATTCCCT AAGTACTTCT GCAACTCAGG 721 GCAATGGTAC ACGTGATCAG AAATTAGACA CCTTCCCACT GGGGACACAG ACACAGGAAG 781 TAGCAAGAAG GGAGATGCCA AGTGACAATC ACCAGGAAGA TGAGTTCAGA CACTACTCGC 841 CTCGTCAGTC CACAGTCCGA TCCCCAGAGA AGATGACTAG AGAAGGGTAC CAAGTATCTT 901 TTTTGGACAA TAAGTCTTCA GGTTCTTCTC CAGAAAAGGA ATTGATACCA AAACCTGATA 961 CTTTTCATCT TACCCATGAT GCCTCATTGA GTAAATGCCT GGATGTGGGT GATTCTAGCC 1021 AGATCCATCC CTATCAGTTA CCTTCAGATG TTGGTCTGGA AAATTATGAC AGTTGTTATT 1081 CTCAAACTCT ATCCCTGCAT GGAAGTCTTG GTAAAAGGCC TCAGAGAAGC AAGAACTATC 1141 AAGAGTATAG CATAAAGCCT TCAAATGACA TAAAGACCAC CGCTTCACAT TCCTGTGGAG 1201 ACTTATTAAC TTCTCTGTCA AACCCTGACT CCAGCACTGG AAGGCTTTTG AAGCTTAGTT 1261 CAGATCTGTA TGCCACAACC CATTTCAACA GTGACCCTGC TGTACTTGTC AATGTAGAGC 1321 AACAATTATC TACCAGCCTG GATGATTTAA CACCAGCACA TGGTTCTGTC CCAAACAACG 1381 CTGTCCTGGG AAACAGGACA ACTCCTCTGC GGACACTGCT GTTGTCTCCT GGGACTTCAG 1441 AACACAGAAA GATTTTTACC AAGAGGTCAC TAAGCCCATC GAAGAGAGGA TTCAAATGGA 1501 AGGACAATAT CCTTGCCAAC CTGAATCTAA AGCATGGTTT CCAAGATGCT ACAGGCAGCG 1561 AGCCTCTCTC TAGTGACCTG GGTAGTTTGC ACGGTTTGGC TGGAAACCAC AGTCCCCCCA 1621 TCTCTGCCAG AACCCCCCAT GTGGCCACTG TCCTCAGACA GCTCCTGGAG CTTGTGGATA 1681 AGCACTGGAA TGGCTCCGGC TCCCTCCTCC TCAACAAGAA GTTTCTCGGT CCTGCCCGAG 1741 ATTTGCTTCT GTCTTTGGTA GTCCCGGCTC CTTCTCAGCC GAGGTGTTGC TCACATCCTG 1801 AAGACACGAT GAAAGCATTC TGCAGGAGGG AGCTTGAACT GAAGGAGGCT GCGCAGCTGG 1861 TCCCTAATGA CATGGAAAGT TTGAAGCAAA AACTGGTCAG AGTGCTGGAG GAAAACCTCA 1921 TTTTGTCAGA AAAAATTCAA CAGTTGGAGG AAGGTGCTGC CATCTCAATT GTGAGTGGGC 1981 AACAGTCACA TACTTATGAT GATCTTCTGC ACAAAAACCA ACAGCTGACC ATGCAGGTGG 2041 CTTGCCTGAA CCAGGAGCTT GCCCAGCTGA AAAAGCTGGA GAAGACAGTT GCCATTCTCC 2101 ATGAAAGTCA GAGATCCCTG GTGGTAACTA ATGAGTATCT GCTGCAGCAG CTGAATAAGG 2161 AGCCAAAAGG TTATTCCGGG AAAGCGCTCC TGCCTCCTGA GAAGGGTCAT CATCTGGGGA 2221 GATCATCGCC CTTTGGGAAA AGCACGTTGT CTTCCTCCTC ACCAGTGGCA CATGAGACTG 2281 GTCAGTATCT AATACAGAGC GTCTTGGATG CTGCCCCAGA GCCTGGCTTA TTGCCAACTT 2341 TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac