Construct: ORF ccsbBroadEn_08506

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010591.1_s300c1, BRDN0000457088
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC36 (55282)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55282 LRRC36 leucine rich repeat contain... NM_018296.6 99.9% 99.8% 127G>A
2 human 55282 LRRC36 leucine rich repeat contain... XR_243416.2 88% (many diffs)
3 human 55282 LRRC36 leucine rich repeat contain... XM_017023400.2 86.9% 85.9% (many diffs)
4 human 55282 LRRC36 leucine rich repeat contain... XM_005256025.2 85.7% 85.2% (many diffs)
5 human 55282 LRRC36 leucine rich repeat contain... NM_001161575.1 82.9% 82.1% (many diffs)
6 human 55282 LRRC36 leucine rich repeat contain... XM_005256026.2 80.4% 80.3% 127G>A;753_754ins441
7 human 55282 LRRC36 leucine rich repeat contain... XR_429723.1 79.7% (many diffs)
8 human 55282 LRRC36 leucine rich repeat contain... XM_005256027.2 78.7% 72.9% 127G>A;1659_1660ins146;1782_1783ins334
9 human 55282 LRRC36 leucine rich repeat contain... XM_011523200.1 78.7% 72.9% 127G>A;1659_1660ins146;1782_1783ins334
10 human 55282 LRRC36 leucine rich repeat contain... XM_005256028.1 77.7% 77.7% 0_1ins504
11 human 55282 LRRC36 leucine rich repeat contain... XM_011523201.1 77.7% 77.7% 0_1ins504
12 human 55282 LRRC36 leucine rich repeat contain... XM_011523202.2 77.5% 77.5% 68_69ins507
13 human 55282 LRRC36 leucine rich repeat contain... XM_011523203.1 72.6% 72.5% 127G>A;576_577ins618
14 human 55282 LRRC36 leucine rich repeat contain... XM_011523204.1 67.9% 67.9% 0_1ins726
15 human 55282 LRRC36 leucine rich repeat contain... XM_011523205.1 67.9% 67.9% 0_1ins726
16 human 55282 LRRC36 leucine rich repeat contain... XM_024450338.1 67.9% 67.9% 0_1ins726
17 human 55282 LRRC36 leucine rich repeat contain... XM_011523206.3 66.2% 66% (many diffs)
18 human 55282 LRRC36 leucine rich repeat contain... XM_017023401.1 60.3% 56.5% 127G>A;753_754ins751;908_909ins146
19 human 55282 LRRC36 leucine rich repeat contain... XM_017023402.1 52.4% 48.7% 127G>A;576_577ins928;731_732ins146
20 mouse 270091 Lrrc36 leucine rich repeat contain... XM_006531055.2 84.4% 80.6% (many diffs)
21 mouse 270091 Lrrc36 leucine rich repeat contain... NM_001170788.1 84.2% 80.4% (many diffs)
22 mouse 270091 Lrrc36 leucine rich repeat contain... XM_006531056.2 83.9% 80.1% (many diffs)
23 mouse 270091 Lrrc36 leucine rich repeat contain... XM_006531057.2 81.5% 73% (many diffs)
24 mouse 270091 Lrrc36 leucine rich repeat contain... XR_387748.2 78.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2331
ORF length:
2262
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGAGCAA TGGGAGCTGG ACGAGGAAGG CATTCGCCGC CTGGGGGCGC
121TGACGCTGGA GCAGCCGGAA CTGGTGGAGT CTCTTTCATT GCAGGGATCT TATGCTGGCA
181AAATCCATTC CATTAGTGAT GCCTTCAGAA ATTTTAAAAA TCTCCGATCC TTAGATTTAT
241CAAGGAATTT GATCACTAGC CTTAAGGGAA TCCAGTATTT ATGTTCACTC CAAGACCTGA
301ATTTATATTA TAACAACATT CCTTCATTAG TGGAAGTGTC CCGTCTACAA CCGTTACCCT
361TCCTCAAAGA ACTGGATTTG AGACTTAATC CTGTTGTAAG GAAAGATACA GATTATAGGC
421TCTTTGCTGT ATATACACTA CAAACTCTGG AGAAATTAGA TGACCGAACT GTACGTGAAG
481GTGAGAGAAA AGCTGCCAAG CTGCATTTTA GTCAGTTGGG CAACAGTGAA AATTTTCTTT
541TAGAGGTGGA AAAAAGCTCT AGGGAGAAGA CAATGAAAAA CTGTGTAACA GGTGAGAGCT
601CTGCATCAAA AGTCAGTGCT AATGTTGACA GCAGGATTGA AATGGACTCA AACAAAGGAC
661TTTTTATTCC CTTCCCCAAC CGGGAAATAA AGGATTCCCT AAGTACTTCT GCAACTCAGG
721GCAATGGTAC ACGTGATCAG AAATTAGACA CCTTCCCACT GGGGACACAG ACACAGGAAG
781TAGCAAGAAG GGAGATGCCA AGTGACAATC ACCAGGAAGA TGAGTTCAGA CACTACTCGC
841CTCGTCAGTC CACAGTCCGA TCCCCAGAGA AGATGACTAG AGAAGGGTAC CAAGTATCTT
901TTTTGGACAA TAAGTCTTCA GGTTCTTCTC CAGAAAAGGA ATTGATACCA AAACCTGATA
961CTTTTCATCT TACCCATGAT GCCTCATTGA GTAAATGCCT GGATGTGGGT GATTCTAGCC
1021AGATCCATCC CTATCAGTTA CCTTCAGATG TTGGTCTGGA AAATTATGAC AGTTGTTATT
1081CTCAAACTCT ATCCCTGCAT GGAAGTCTTG GTAAAAGGCC TCAGAGAAGC AAGAACTATC
1141AAGAGTATAG CATAAAGCCT TCAAATGACA TAAAGACCAC CGCTTCACAT TCCTGTGGAG
1201ACTTATTAAC TTCTCTGTCA AACCCTGACT CCAGCACTGG AAGGCTTTTG AAGCTTAGTT
1261CAGATCTGTA TGCCACAACC CATTTCAACA GTGACCCTGC TGTACTTGTC AATGTAGAGC
1321AACAATTATC TACCAGCCTG GATGATTTAA CACCAGCACA TGGTTCTGTC CCAAACAACG
1381CTGTCCTGGG AAACAGGACA ACTCCTCTGC GGACACTGCT GTTGTCTCCT GGGACTTCAG
1441AACACAGAAA GATTTTTACC AAGAGGTCAC TAAGCCCATC GAAGAGAGGA TTCAAATGGA
1501AGGACAATAT CCTTGCCAAC CTGAATCTAA AGCATGGTTT CCAAGATGCT ACAGGCAGCG
1561AGCCTCTCTC TAGTGACCTG GGTAGTTTGC ACGGTTTGGC TGGAAACCAC AGTCCCCCCA
1621TCTCTGCCAG AACCCCCCAT GTGGCCACTG TCCTCAGACA GCTCCTGGAG CTTGTGGATA
1681AGCACTGGAA TGGCTCCGGC TCCCTCCTCC TCAACAAGAA GTTTCTCGGT CCTGCCCGAG
1741ATTTGCTTCT GTCTTTGGTA GTCCCGGCTC CTTCTCAGCC GAGGTGTTGC TCACATCCTG
1801AAGACACGAT GAAAGCATTC TGCAGGAGGG AGCTTGAACT GAAGGAGGCT GCGCAGCTGG
1861TCCCTAATGA CATGGAAAGT TTGAAGCAAA AACTGGTCAG AGTGCTGGAG GAAAACCTCA
1921TTTTGTCAGA AAAAATTCAA CAGTTGGAGG AAGGTGCTGC CATCTCAATT GTGAGTGGGC
1981AACAGTCACA TACTTATGAT GATCTTCTGC ACAAAAACCA ACAGCTGACC ATGCAGGTGG
2041CTTGCCTGAA CCAGGAGCTT GCCCAGCTGA AAAAGCTGGA GAAGACAGTT GCCATTCTCC
2101ATGAAAGTCA GAGATCCCTG GTGGTAACTA ATGAGTATCT GCTGCAGCAG CTGAATAAGG
2161AGCCAAAAGG TTATTCCGGG AAAGCGCTCC TGCCTCCTGA GAAGGGTCAT CATCTGGGGA
2221GATCATCGCC CTTTGGGAAA AGCACGTTGT CTTCCTCCTC ACCAGTGGCA CATGAGACTG
2281GTCAGTATCT AATACAGAGC GTCTTGGATG CTGCCCCAGA GCCTGGCTTA TTGCCAACTT
2341TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)