Construct: ORF ccsbBroadEn_08516

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009123.1_s300c1, BRDN0000457366
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MIS18BP1 (55320)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55320 MIS18BP1 MIS18 binding protein 1 NM_018353.5 99.9% 99.8% 266C>T;2759G>A
2 human 55320 MIS18BP1 MIS18 binding protein 1 XM_005267833.5 99.9% 99.8% 266C>T;2759G>A
3 human 55320 MIS18BP1 MIS18 binding protein 1 XM_017021425.1 99.9% 99.8% 266C>T;2759G>A
4 human 55320 MIS18BP1 MIS18 binding protein 1 XM_011536923.1 65.6% 65.6% 0_1ins1164;1595G>A
5 human 55320 MIS18BP1 MIS18 binding protein 1 XR_002957559.1 55.9% (many diffs)
6 human 55320 MIS18BP1 MIS18 binding protein 1 XR_001750406.2 44.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3462
ORF length:
3396
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TGCAACACCT TTGAAACATT CAAGAATTTA CTTACCTCCA GAGGCATCTT
121CTCAAAGGAG AAATCTACCC ATGGATGCAA TCTTTTTTGA CAGCATTCCT TCAGGCACAC
181TTACTCCTGT AAAAGATTTG GTGAAATATC AGAACTCCTC CTTAAAATTG AATGACCATA
241AAAAGAATCA GTTCCTAAAA ATGACAACTT TTAACAATAA AAATATATTT CAATCAACTA
301TGCTAACAGA GGCTACTACC TCTAACAGTT TTCTTGATAT CAGTGCTATA AAGCCCAACA
361AGGATGGATT AAAAAATAAA GCAAACTATG AATCACCAGG AAAAATATTT CTAAGAATGA
421AAGAAAAAGT ACTGCGTGAC AAGCAAGAAC AGCCATCAAG AAACAGTAGT TTGTTGGAAC
481CACAGAAAAG TGGAAATAAT GAAACCTTCA CTCCTAACAG AGTTGAAAAA AAAAAATTGC
541AGCATACCTA CCTATGTGAA GAAAAGGAAA ACAACAAATC ATTCCAGTCA GATGACAGTT
601CACTAAGAGC CTCAGTCCAA GGAGTTCCTC TAGAATCATC AAATAATGAT ATTTTCCTCC
661CGGTCAAACA AAAGATTCAG TGCCAGCAGG AAAAGAAAGC ACCACTGCAC AATTTAACTT
721ACGAACTTCC AACTCTGAAC CAAGAACAGG AAAATTTTTT GGCTGTAGAA GCCCGAAACA
781AGACATTAAC TAGAGCTCAG TTGGCTAAAC AAATTTTTCA CTCAAAGGAG AGTATAGTTG
841CAACCACTAA ATCCAAAAAG GACACGTTTG TTTTAGAAAG CGTTGATTCT GCTGATGAAC
901AATTTCAAAA TACTAATGCT GAGACTCTCA GTACTAATTG TATTCCTATT AAAAATGGCA
961GCCTGTTAAT GGTTTCTGAT AGTGAGAGGA CAACAGAAGG GACTTCGCAA CAGAAAGTTA
1021AGGAAGGAAA TGGAAAAACA GTGCCTGGAG AGACAGGTCT TCCAGGTTCC ATGAAAGATA
1081CATGTAAAAT TGTACTTGCA ACACCAAGAC TTCATATAAC AATACCTCGG AGGTCAAAAA
1141GAAATATTTC AAAGCTTTCT CCTCCAAGAA TATTTCAAAC TGTTACAAAT GGACTTAAAA
1201AAAATCAGGT AGTTCAGCTA CAGGAATGGA TGATTAAAAG CATCAATAAT AATACTGCTA
1261TATGTGTAGA AGGAAAATTG ATAGACGTCA CTAACATATA TTGGCACAGT AATGTAATTA
1321TAGAGCGGAT TGAGCACAAC AAACTTAGGA CTATATCAGG CAACGTTTAT ATATTAAAAG
1381GCATGATAGA CCAAATTTCC ATGAAAGAAG CAGGATATCC AAATTATCTC ATAAGGAAAT
1441TTATGTTTGG ATTTCCAGAA AATTGGAAAG AGCACATTGA TAATTTTCTG GAACAATTAA
1501GGGCTGGTGA AAAGAACAGG GAAAAGACCA AACAAAAACA GAAAACTGGA AGATCTGTCC
1561GTGACATAAG GAAATCAATG AAAAATGATG CACGAGAAAA CCAAACAGAT ACTGCTCAAA
1621GAGCCACCAC CACTTACGAT TTTGATTGTG ATAATTTGGA ACTGAAGAGT AATAAGCACA
1681GTGAGTCACC AGGAGCTACA GAATTAAACA TGTGCCACAG TAATTGCCAA AATAAACCAA
1741CATTAAGGTT CCCAGATGAC CAAGTAAATA ATACTATTCA AAATGGAGGA GGAGATGACT
1801TATCTAATCA GGAATTAATT GGAAAAAAAG AATATAAAAT GTCTTCAAAG AAACTAAAAA
1861TTGGTGAAAG AACAAATGAA AGGATAATAA AAAGTCAGAA GCAAGAGACA ACTGAAGAAT
1921TGGATGTATC CATTGATATT CTAACCTCAA GGGAACAGTT TTTCTCAGAT GAAGAAAGAA
1981AATACATGGC CATCAATCAG AAGAAAGCTT ATATTTTAGT AACACCACTT AAATCTAGAA
2041AAGTGATAGA GCAAAGATGC ATGAGGTATA ATCTGTCCGC TGGCACCATC AAAGCAGTAA
2101CAGATTTTGT AATACCAGAG TGTCAAAAAA AAAGTCCCAT CAGCAAGTCC ATGGGGACTT
2161TAGAAAATAC ATTTGAAGGT CATAAAAGTA AAAACAAGGA AGATTGCGAT GAACGTGACT
2221TACTTACTGT CAACCGGAAA ATAAAAATAT CTAACCTTGA AAAGGAACAA ATGCTCACCT
2281CTGACTTTAA GAAAAATACC AGACTATTAC CAAAATTGAA GAAAATAGAA AATCAGGTAG
2341CTATGTCATT TTATAAGCAT CAGTCCTCAC CAGATTTGTC AAGTGAAGAA AGTGAAACAG
2401AAAAGGAAAT TAAAAGGAAA GCTGAAGTTA AGAAAACCAA AGCAGGAAAC ACCAAAGAAG
2461CAGTGGTTCA CCTGAGAAAG AGCACAAGAA ACACAAGTAA TATTCCAGTG ATTTTGGAAC
2521CTGAAACTGA AGAAAGTGAA AATGAATTTT ATATCAAACA AAAGAAAGCT AGACCTTCCG
2581TCAAAGAAAC TCTTCAGAAG TCTGGTGTTA GGAAAGAGTT TCCAATTACT GAGGCAGTAG
2641GATCTGATAA GACAAATAGG CATCCCTTAG AATGCTTACC TGGTTTAATT CAGGATAAGG
2701AATGGAATGA GAAGGAGTTA CAGAAACTTC ATTGTGCTTT TGCATCTCTT CCAAAGCACA
2761AACCTGGTTT CTGGTCAGAG GTAGCTGCGG CTGTAGGTTC TCGATCTCCT GAAGAATGCC
2821AGAAGAAATA CATGGAAAAT CCCAGAGGAA AAGGATCCCA GAAACATGTC ACTAAGAAGA
2881AGCCAGCCAA TTCCAAAGGC CAAAATGGCA AGAGAGGTGA TGCTGATCAG AAACAAACTA
2941TTAAGATAAC TGCCAAAGTG GGAACTCTTA AAAGGAAGCA ACAGATGAGG GAATTTCTGG
3001AACAGTTGCC AAAAGATGAC CATGATGATT TTTTCAGTAC AACACCTTTA CAGCATCAAA
3061GAATACTGTT GCCAAGTTTC CAGGACAGTG AAGATGATGA TGATATTCTG CCAAATATGG
3121ACAAAAATCC AACAACTCCA TCATCAGTTA TCTTTCCATT GGTAAAAACT CCTCAATGTC
3181AGCATGTCAG TCCTGGCATG CTAGGTTCTA TAAATAGGAA TGACTGTGAT AAATATGTTT
3241TTCGTATGCA AAAATATCAT AAAAGTAATG GTGGTATTGT CTGGGGCAAC ATCAAGAAAA
3301AATTAGTTGA AACTGATTTC TCAACTCCAA CACCAAGAAG GAAAACCCCA TTTAACACAG
3361ACTTAGGAGA AAACTCTGGT ATTGGAAAAC TTTTCACTAA TGCTGTGGAA TCTTTAGATG
3421AAGAAGAGAA AGATTATTAT TTTTCGAACT CTGATTCTGC ATACCCAACT TTCTTGTACA
3481AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)