Construct: ORF ccsbBroadEn_08523

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006422.1_s300c1, BRDN0000387201
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC39A9 (55334)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55334 SLC39A9 solute carrier family 39 me... NM_018375.5 99.8% 99.6% 853C>T
2 human 55334 SLC39A9 solute carrier family 39 me... NM_001252148.2 92.3% 92.1% 402_403ins69;784C>T
3 human 55334 SLC39A9 solute carrier family 39 me... NM_001330185.2 78.3% 78.1% 204_205ins198;655C>T
4 human 55334 SLC39A9 solute carrier family 39 me... NM_001252150.2 75.4% 75.2% 693_694insAGCAGTAAA;696_696delTins217
5 human 55334 SLC39A9 solute carrier family 39 me... NM_001252151.2 61.4% 61.2% 0_1ins354;499C>T
6 human 55334 SLC39A9 solute carrier family 39 me... NM_001252152.2 61.4% 61.2% 0_1ins354;499C>T
7 human 55334 SLC39A9 solute carrier family 39 me... XM_017021426.2 61.4% 61.2% 0_1ins354;499C>T
8 human 55334 SLC39A9 solute carrier family 39 me... XM_024449648.1 61.4% 61.2% 0_1ins354;499C>T
9 mouse 328133 Slc39a9 solute carrier family 39 (z... NM_026244.2 89.4% 92.8% (many diffs)
10 mouse 328133 Slc39a9 solute carrier family 39 (z... XM_017315121.1 89.4% 92.8% (many diffs)
11 mouse 328133 Slc39a9 solute carrier family 39 (z... XM_006516034.3 81.3% 81.6% (many diffs)
12 mouse 328133 Slc39a9 solute carrier family 39 (z... XM_006516032.3 67.9% 70% (many diffs)
13 mouse 328133 Slc39a9 solute carrier family 39 (z... XM_006516033.3 57.8% 47.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
987
ORF length:
921
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TGATTTCATC TCCATTAGCC TGCTGTCTCT GGCTATGTTG GTGGGATGTT
121ACGTGGCCGG AATCATTCCC TTGGCTGTTA ATTTCTCAGA GGAACGACTG AAGCTGGTGA
181CTGTTTTGGG TGCTGGCCTT CTCTGTGGAA CTGCTCTGGC AGTCATCGTG CCTGAAGGAG
241TACATGCCCT TTATGAAGAT ATTCTTGAGG GAAAACACCA CCAAGCAAGT GAAACACATA
301ATGTGATTGC ATCAGACAAA GCAGCAGAAA AATCAGTTGT CCATGAACAT GAGCACAGCC
361ACGACCACAC ACAGCTGCAT GCCTATATTG GTGTTTCCCT CGTTCTGGGC TTCGTTTTCA
421TGTTGCTGGT GGACCAGATT GGTAACTCCC ATGTGCATTC TACTGACGAT CCAGAAGCAG
481CAAGGTCTAG CAATTCCAAA ATCACCACCA CGCTGGGTCT GGTTGTCCAT GCTGCAGCTG
541ATGGTGTTGC TTTGGGAGCA GCAGCATCTA CTTCACAGAC CAGTGTCCAG TTAATTGTGT
601TTGTGGCAAT CATGCTACAT AAGGCACCAG CTGCTTTTGG ACTGGTTTCC TTCTTGATGC
661ATGCTGGCTT AGAGCGGAAT CGAATCAGAA AGCACTTGCT GGTCTTTGCA TTGGCAGCAC
721CAGTTATGTC CATGGTGACA TACTTAGGAC TGAGTAAGAG CAGTAAAGAA GCCCTTTCAG
781AGGTGAACGC CACGGGAGTG GCCATGCTTT TCTCTGCCGG GACATTTCTT TATGTTGCCA
841CAGTACATGT CCTCCCTGAG GTGGGCGGAA TAGGGCACAG CCACAAGCCC GATGCCACGG
901GAGGGAGAGG CCTCAGCTGC CTGGAAGTGG CAGCCCTGGT TCTGGGTTGC CTCATCCCTC
961TCATCCTGTC AGTAGGACAC CAGCATTACC CAACTTTCTT GTACAAAGTt ggcattataa
1021gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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