Transcript: Mouse XM_006516034.3

PREDICTED: Mus musculus solute carrier family 39 (zinc transporter), member 9 (Slc39a9), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc39a9 (328133)
Length:
5162
CDS:
719..1666

Additional Resources:

NCBI RefSeq record:
XM_006516034.3
NBCI Gene record:
Slc39a9 (328133)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006516034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346750 TAATTGTGTTCGTGGCAATAA pLKO_005 1248 CDS 100% 13.200 18.480 N Slc39a9 n/a
2 TRCN0000346682 GTTACGTGGCCGGAATCATTC pLKO_005 771 CDS 100% 10.800 15.120 N Slc39a9 n/a
3 TRCN0000363871 CTAAAGACGATGGCAACTAAT pLKO_005 2015 3UTR 100% 13.200 9.240 N Slc39a9 n/a
4 TRCN0000346746 GCTGACATACTTAGGATTAAG pLKO_005 1390 CDS 100% 13.200 9.240 N Slc39a9 n/a
5 TRCN0000038630 GCTGTTAATTTCTCAGAGGAA pLKO.1 797 CDS 100% 2.640 1.848 N SLC39A9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006516034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08523 pDONR223 100% 81.3% 81.6% None (many diffs) n/a
2 ccsbBroad304_08523 pLX_304 0% 81.3% 81.6% V5 (many diffs) n/a
3 TRCN0000470805 GTGCTAACCTGGTGTTCCTGAGCC pLX_317 52.7% 81.3% 81.6% V5 (many diffs) n/a
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