Construct: ORF ccsbBroadEn_08533
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002612.1_s300c1, BRDN0000387469
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AP1AR (55435)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55435 | AP1AR | adaptor related protein com... | NM_001128426.3 | 99.6% | 99.2% | 15C>G;628A>G;807A>G |
| 2 | human | 55435 | AP1AR | adaptor related protein com... | NM_018569.6 | 88.7% | 88.4% | (many diffs) |
| 3 | human | 55435 | AP1AR | adaptor related protein com... | XM_017008379.2 | 76.8% | 76.9% | (many diffs) |
| 4 | human | 55435 | AP1AR | adaptor related protein com... | XM_017008378.2 | 68.5% | 68.5% | (many diffs) |
| 5 | human | 55435 | AP1AR | adaptor related protein com... | XM_017008380.1 | 52.5% | 52.4% | 0_1ins381;247A>G;426A>G |
| 6 | human | 55435 | AP1AR | adaptor related protein com... | NR_136622.2 | 13.6% | (many diffs) | |
| 7 | mouse | 211556 | Ap1ar | adaptor-related protein com... | NM_001346718.1 | 82.3% | 88.4% | (many diffs) |
| 8 | mouse | 211556 | Ap1ar | adaptor-related protein com... | NM_145964.2 | 73.6% | 79.1% | (many diffs) |
| 9 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501244.2 | 70.8% | 66.8% | (many diffs) |
| 10 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501245.2 | 68.4% | 72.6% | (many diffs) |
| 11 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501243.2 | 66.6% | 64.2% | (many diffs) |
| 12 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501242.1 | 65.4% | 61.6% | (many diffs) |
| 13 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501241.2 | 64.2% | 60.5% | (many diffs) |
| 14 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501240.1 | 59.9% | 56.6% | (many diffs) |
| 15 | mouse | 211556 | Ap1ar | adaptor-related protein com... | XM_006501247.2 | 56.4% | 60.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 873
- ORF length:
- 807
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GAACTGCTGG TGGACGCAGT GCTTCGGACT GCTTCGCAAG GAAGCGGGGC 121 GGCTGCAGCG AGTAGGCGGC GGCGGAGGAT CCAAGTATTT TAGAACATGC TCAAGAGGTG 181 AGCACTTAAC AATAGAGTTT GAGAATCTAG TAGAAAGTGA TGAAGGGGAG AGCCCAGGAA 241 GCAGTCATAG GCCTCTTACT GAGGAAGAAA TTGTTGACCT AAGAGAAAGG CATTATGATT 301 CCATTGCCGA AAAACAAAAA GATCTTGATA AGAAAATTCA AAAAGAGCAA GAAAGGCAGA 361 GAATTGTGCA GCAATATCAT CCTTCCAACA ATGGAGAATA TCAAAGTTCA GGACCAGAAG 421 ATGACTTCGA ATCTTGTTTG AGAAATATGA AGTCACAGTA TGAAGTTTTT CGAAGTAGTA 481 GACTCTCATC AGATGCTACA GTTTTGACAC CAAATACAGA AAGCAGTTGT GATTTAATGA 541 CCAAAACTAA ATCAACTAGT GGAAATGACG ACAGCACATC CTTAGATCTA GAGTGGGAAG 601 ATGAAGAAGG AATGAATAGA ATGCTTCCAA TGAGAGAACG TTCCAAAACA GAGGAAGACA 661 TTCTACGGGC AGCACTTAAG TATAGCAACA AGGAGACTGG AAGTAATCCT ACATCAGCCT 721 CTGATGATTC CAATGGGCTG GAGTGGGAAA ATGATTTTGT TAGTGCCGAA ATGGATGATA 781 ATGGAAATTC CGAGTATTCT GGATTTGTAA ATCCTGTATT AGAACTGTCT GATTCTGGCA 841 TAAGGCATTC TGACACAGAT CAACAGACTC GGTACCCAAC TTTCTTGTAC AAAGTtggca 901 ttataagaaa gcattgctta tcaatttgtt gcaacgaac