Transcript: Human XM_017008380.1

PREDICTED: Homo sapiens adaptor related protein complex 1 associated regulatory protein (AP1AR), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AP1AR (55435)
Length:
2591
CDS:
517..945

Additional Resources:

NCBI RefSeq record:
XM_017008380.1
NBCI Gene record:
AP1AR (55435)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017008380.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000130454 GCTGAAGTATCGGCATTACAT pLKO.1 1486 3UTR 100% 5.625 7.875 N AP1AR n/a
2 TRCN0000128207 CCGAGTATTCTGGATTTGTAA pLKO.1 860 CDS 100% 5.625 3.938 N AP1AR n/a
3 TRCN0000129837 CCTGTATTAGAACTGTCTGAT pLKO.1 883 CDS 100% 4.950 3.465 N AP1AR n/a
4 TRCN0000130336 GCCTTCCTTTACCTTGTAGTA pLKO.1 1879 3UTR 100% 4.950 3.465 N AP1AR n/a
5 TRCN0000130511 GCCGAAATGGATGATAATGGA pLKO.1 835 CDS 100% 3.000 2.100 N AP1AR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017008380.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08533 pDONR223 100% 52.5% 52.4% None 0_1ins381;247A>G;426A>G n/a
2 ccsbBroad304_08533 pLX_304 0% 52.5% 52.4% V5 0_1ins381;247A>G;426A>G n/a
3 TRCN0000466991 CCCTGTGGATACATCTAACCATGC pLX_317 59.3% 52.5% 52.4% V5 0_1ins381;247A>G;426A>G n/a
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