Construct: ORF ccsbBroadEn_08574

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003412.1_s300c1, BRDN0000390826
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC11 (55735)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55735 DNAJC11 DnaJ heat shock protein fam... NM_018198.4 99.8% 99.8% 869C>G;1080T>C
2 human 55735 DNAJC11 DnaJ heat shock protein fam... XM_017001745.1 83.7% 83.3% (many diffs)
3 mouse 230935 Dnajc11 DnaJ heat shock protein fam... NM_172704.3 88.9% 96.4% (many diffs)
4 mouse 230935 Dnajc11 DnaJ heat shock protein fam... XM_017320184.1 83.3% 90.2% (many diffs)
5 mouse 230935 Dnajc11 DnaJ heat shock protein fam... XR_001784136.1 45.4% (many diffs)
6 mouse 230935 Dnajc11 DnaJ heat shock protein fam... XM_017320185.1 40.8% 44% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACGGCCTTG AGCGAGGAGG AGCTGGACAA TGAAGACTAT TACTCGTTGC
121TGAACGTGCG CAGGGAGGCC TCTTCTGAAG AGCTGAAAGC TGCCTACCGG AGGCTCTGTA
181TGCTCTACCA TCCAGACAAG CACAGAGACC CAGAGCTCAA GTCACAGGCG GAACGACTGT
241TTAACCTTGT TCACCAGGCT TATGAAGTGC TTAGTGACCC CCAAACCAGG GCCATCTATG
301ATATATATGG GAAGAGAGGA CTGGAAATGG AAGGATGGGA GGTTGTGGAA AGGAGGAGAA
361CCCCTGCTGA AATTCGAGAG GAGTTTGAGC GGCTGCAGAG AGAGAGAGAA GAGAGGAGAT
421TGCAGCAGCG AACCAATCCC AAGGGAACGA TCAGCGTTGG AGTAGATGCC ACCGACCTTT
481TTGATCGCTA TGATGAGGAG TATGAAGATG TGTCCGGCAG TAGCTTTCCG CAGATTGAAA
541TTAATAAAAT GCACATATCC CAGTCCATTG AGGCACCCTT GACAGCGACA GACACAGCCA
601TCCTCTCTGG AAGCCTCTCA ACCCAGAATG GAAATGGAGG AGGTTCCATT AACTTTGCGC
661TCAGACGAGT AACTTCGGCA AAGGGATGGG GAGAGTTGGA ATTTGGAGCT GGAGACCTAC
721AGGGGCCTTT GTTCGGTCTC AAGCTGTTCC GTAATCTCAC ACCAAGATGC TTTGTGACAA
781CAAACTGTGC TCTGCAGTTT TCATCCCGTG GAATCCGACC CGGCCTGACC ACTGTCCTAG
841CTCGGAACCT AGACAAGAAC ACCGTGGGCT ACCTGCAGTG GCGATGGGGT ATCCAGTCAG
901CCATGAACAC TAGCATCGTC CGAGACACTA AAAGCAGCCA CTTCACTGTG GCCCTGCAGC
961TGGGAATCCC TCACTCCTTT GCACTGATCA GCTATCAGCA CAAATTCCAA GATGACGATC
1021AGACTCGTGT GAAAGGATCC CTCAAAGCAG GCTTCTTTGG GACGGTGGTG GAGTACGGAG
1081CTGAGAGGAA GATCTCCAGG CACAGCGTTT TGGGTGCAGC TGTCAGCGTT GGAGTTCCAC
1141AGGGCGTTTC TCTCAAAGTC AAGCTCAACA GGGCCAGTCA GACATACTTC TTCCCTATTC
1201ACTTGACGGA CCAGCTTCTG CCCAGCGCCA TGTTCTATGC CACCGTGGGG CCTCTAGTGG
1261TCTACTTTGC CATGCACCGT CTGATCATCA AACCATACCT CAGGGCTCAG AAAGAGAAGG
1321AATTGGAGAA GCAGAGGGAA AGCGCCGCCA CCGATGTGCT GCAGAAGAAG CAAGAGGCGG
1381AGTCCGCTGT CCGGCTGATG CAGGAATCTG TCCGAAGGAT AATTGAGGCA GAAGAGTCCA
1441GAATGGGCCT CATCATCGTC AATGCCTGGT ACGGGAAGTT TGTCAATGAC AAGAGCAGGA
1501AGAGCGAGAA GGTGAAGGTG ATTGACGTGA CTGTGCCCCT GCAGTGCCTG GTGAAGGACT
1561CGAAGCTCAT CCTCACGGAG GCCTCCAAGG CTGGGCTGCC TGGCTTTTAT GACCCGTGTG
1621TGGGGGAAGA GAAGAACCTG AAAGTGCTCT ATCAGTTCCG GGGCGTCCTG CATCAGGTGA
1681TGGTGCTGGA CAGTGAGGCC CTCCGGATAC CAAAGCAGTC CCACAGGATC GATACAGATG
1741GATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1801gcaacgaac

Download FASTA (ORF) (Full)