Construct: ORF ccsbBroadEn_08602

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010798.1_s300c1, BRDN0000397180
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HDAC8 (55869)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55869 HDAC8 histone deacetylase 8 NM_018486.3 99.8% 99.7% 92T>C;159G>A
2 human 55869 HDAC8 histone deacetylase 8 XM_011530986.3 93.3% 93% 92T>C;159G>A;1112_1189del
3 human 55869 HDAC8 histone deacetylase 8 XM_017029641.2 92.9% 92.8% 92T>C;159G>A;549_550ins78
4 human 55869 HDAC8 histone deacetylase 8 XM_017029640.2 86.9% 86.6% (many diffs)
5 human 55869 HDAC8 histone deacetylase 8 XR_002958779.1 84.4% (many diffs)
6 human 55869 HDAC8 histone deacetylase 8 NM_001166418.2 75.6% 75.5% 92T>C;159G>A;164_165ins273
7 human 55869 HDAC8 histone deacetylase 8 NM_001166419.2 66.8% 65.4% (many diffs)
8 human 55869 HDAC8 histone deacetylase 8 XM_017029645.2 66.5% 66.2% (many diffs)
9 human 55869 HDAC8 histone deacetylase 8 XM_017029642.1 64.7% 64.3% (many diffs)
10 human 55869 HDAC8 histone deacetylase 8 XR_002958780.1 64% (many diffs)
11 human 55869 HDAC8 histone deacetylase 8 XM_017029643.2 62.6% 62.1% (many diffs)
12 human 55869 HDAC8 histone deacetylase 8 XR_938402.3 62% (many diffs)
13 human 55869 HDAC8 histone deacetylase 8 XM_017029646.1 61.5% 61.2% 0_1ins387;725_802del
14 human 55869 HDAC8 histone deacetylase 8 XM_017029647.2 59.9% 58.5% (many diffs)
15 human 55869 HDAC8 histone deacetylase 8 XM_017029644.2 58.8% 58.5% (many diffs)
16 human 55869 HDAC8 histone deacetylase 8 XR_001755711.2 57.7% (many diffs)
17 human 55869 HDAC8 histone deacetylase 8 XR_002958781.1 57.5% (many diffs)
18 human 55869 HDAC8 histone deacetylase 8 XR_002958783.1 56.8% (many diffs)
19 human 55869 HDAC8 histone deacetylase 8 NR_051952.2 56.2% (many diffs)
20 human 55869 HDAC8 histone deacetylase 8 XM_024452405.1 45.1% 44.9% 0_1ins585;527_604del
21 human 55869 HDAC8 histone deacetylase 8 NM_001166422.2 41.3% 39.2% (many diffs)
22 human 55869 HDAC8 histone deacetylase 8 NM_001166420.1 38.4% 38.4% 92T>C;159G>A;438_438delGins694
23 human 55869 HDAC8 histone deacetylase 8 NM_001166448.2 35.8% 34.5% (many diffs)
24 human 55869 HDAC8 histone deacetylase 8 XR_002958782.1 21.8% (many diffs)
25 mouse 70315 Hdac8 histone deacetylase 8 NM_027382.4 90.8% 96% (many diffs)
26 mouse 70315 Hdac8 histone deacetylase 8 XM_006528275.3 87.9% 92.2% (many diffs)
27 mouse 70315 Hdac8 histone deacetylase 8 XM_011247670.2 82.2% 85.6% (many diffs)
28 mouse 70315 Hdac8 histone deacetylase 8 XM_006528276.3 80.2% 84.8% (many diffs)
29 mouse 70315 Hdac8 histone deacetylase 8 XM_011247671.2 80.1% 84.8% (many diffs)
30 mouse 70315 Hdac8 histone deacetylase 8 NM_001313742.1 59.2% 62.3% (many diffs)
31 mouse 70315 Hdac8 histone deacetylase 8 XM_011247673.2 37.5% 36.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1197
ORF length:
1131
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGAGCCGGAG GAACCGGCGG ACAGTGGGCA GTCGCTGGTC CCGGTTTATA
121TCTATAGTCC CGAGTATGTC AGTATGTGTG ACTCCCCGGC CAAGATCCCC AAACGGGCCA
181GTATGGTGCA TTCTTTGATT GAAGCATATG CACTGCATAA GCAAATGAGG ATAGTTAAGC
241CTAAAGTGGC CTCCATGGAG GAGATGGCCA CCTTCCACAC TGATGCTTAT CTGCAGCATC
301TCCAGAAGGT CAGCCAAGAG GGCGATGATG ATCATCCGGA CTCCATAGAA TATGGGCTAG
361GTTATGACTG CCCAGCCACT GAAGGGATAT TTGACTATGC AGCAGCTATA GGAGGGGCTA
421CGATCACAGC TGCCCAATGC CTGATTGACG GAATGTGCAA AGTAGCAATT AACTGGTCTG
481GAGGGTGGCA TCATGCAAAG AAAGATGAAG CATCTGGTTT TTGTTATCTC AATGATGCTG
541TCCTGGGAAT ATTACGATTG CGACGGAAAT TTGAGCGTAT TCTCTACGTG GATTTGGATC
601TGCACCATGG AGATGGTGTA GAAGACGCAT TCAGTTTCAC CTCCAAAGTC ATGACCGTGT
661CCCTGCACAA ATTCTCCCCA GGATTTTTCC CAGGAACAGG TGACGTGTCT GATGTTGGCC
721TAGGGAAGGG ACGGTACTAC AGTGTAAATG TGCCCATTCA GGATGGCATA CAAGATGAAA
781AATATTACCA GATCTGTGAA AGTGTACTAA AGGAAGTATA CCAAGCCTTT AATCCCAAAG
841CAGTGGTCTT ACAGCTGGGA GCTGACACAA TAGCTGGGGA TCCCATGTGC TCCTTTAACA
901TGACTCCAGT GGGAATTGGC AAGTGTCTTA AGTACATCCT TCAATGGCAG TTGGCAACAC
961TCATTTTGGG AGGAGGAGGC TATAACCTTG CCAACACGGC TCGATGCTGG ACATACTTGA
1021CCGGGGTCAT CCTAGGGAAA ACACTATCCT CTGAGATCCC AGATCATGAG TTTTTCACAG
1081CATATGGTCC TGATTATGTG CTGGAAATCA CGCCAAGCTG CCGGCCAGAC CGCAATGAGC
1141CCCACCGAAT CCAACAAATC CTCAACTACA TCAAAGGGAA TCTGAAGCAT GTGGTCTACC
1201CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1261aac

Download FASTA (ORF) (Full)