Construct: ORF ccsbBroadEn_08611

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015216.1_s300c1, BRDN0000395168
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERBIN (55914)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55914 ERBIN erbb2 interacting protein NM_018695.4 99.7% 99.6% (many diffs)
2 human 55914 ERBIN erbb2 interacting protein NM_001253701.2 99.4% 99.3% (many diffs)
3 human 55914 ERBIN erbb2 interacting protein NM_001253698.2 97.9% 97.8% (many diffs)
4 human 55914 ERBIN erbb2 interacting protein NM_001253697.2 96.8% 96.7% (many diffs)
5 human 55914 ERBIN erbb2 interacting protein NM_001253699.2 96.3% 96.2% (many diffs)
6 human 55914 ERBIN erbb2 interacting protein XM_017009636.2 96.1% 95.9% (many diffs)
7 human 55914 ERBIN erbb2 interacting protein NM_001006600.2 94.7% 94.6% (many diffs)
8 human 55914 ERBIN erbb2 interacting protein XM_017009637.2 94.4% 94.3% (many diffs)
9 human 55914 ERBIN erbb2 interacting protein XM_005248554.3 93.6% 93.5% (many diffs)
10 human 55914 ERBIN erbb2 interacting protein XM_017009635.2 93.6% 93.5% (many diffs)
11 human 55914 ERBIN erbb2 interacting protein XM_005248555.4 93.4% 93.2% (many diffs)
12 human 55914 ERBIN erbb2 interacting protein XM_006714660.4 89.8% 88.6% (many diffs)
13 mouse 59079 Erbin Erbb2 interacting protein NM_001289473.1 85.5% 86.8% (many diffs)
14 mouse 59079 Erbin Erbb2 interacting protein NM_001289475.1 85% 86.3% (many diffs)
15 mouse 59079 Erbin Erbb2 interacting protein NM_001289474.1 83.1% 84.6% (many diffs)
16 mouse 59079 Erbin Erbb2 interacting protein NM_001005868.2 82.7% 84% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4182
ORF length:
4113
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTACAAAA CGAAGTTTGT TTGTGCGGTT GGTACCATGT CGCTGTCTAC
121GAGGGGAAGA GGAGACTGTC ACTACTCTTG ATTATTCTCA TTGCAGCTTA GAACAAGTTC
181CGAAAGAGAT TTTTACTTTT GAAAAAACCT TGGAGGAACT CTATTTAGAT GCTAATCAGA
241TTGAAGAGCT TCCAAAGCAA CTTTTTAACT GTCAGTCTTT ACACAAACTG AGTTTGCCAG
301ACAATGATTT AACAACGTTA CCAGCATCCA TTGCAAACCT TATTAATCTC AGGGAACTGG
361ATGTCAGCAA GAATGGAATA CAGGAGTTTC CAGAAAATAT AAAAAATTGT AAAGTTTTGA
421CAATTGTGGA GGCCAGTGTA AACCCTATTT CCAAGCTCCC TGATGGATTT TCTCAGCTGT
481TAAACCTAAC CCAGTTGTAT CTGAATGATG CTTTTCTTGA GTTCTTGCCA GCAAATTTTG
541GCAGATTAAC TAAACTCCAA ATATTAGAGC TTAGAGAAAA CCAGTTAAAA ATGTTGCCTA
601AAACTATGAA TAGACTGACC CAGCTGGAAA GATTGGATTT GGGAAGTAAC GAATTCACGG
661AAGTGCCTGA AGTACTTGAG CAACTAAGTG GATTGAAAGA GTTTTGGATG GATGCTAATA
721GACTGACTTT TATTCCAGGG TTTATTGGTA GTTTGAAACA GCTCACATAT TTGGATGTTT
781CTAAAAATAA TATTGAAATG GTTGAAGAAG GAATTTCAAC ATGTGAAAAC CTTCAAGACC
841TCCTATTATC AAGCAATTCA CTTCAGCAGC TTCCTGAGCC TATTGGTTCG TTGAAGAATA
901TAACAACGCT TAAAATAGAT GAAAACCAGT TAATGTATCT GCCAGACTCT ATAGGAGGGT
961TAATATCAGT AGAAGAACTG GATTGTAGTT TCAATGAAGT TGAAGCTTTG CCTTCATCTA
1021TTGGGCAGCT TACTAACTTA AGAACTTTTG CTGCTGATCA TAATTACTTA CAACAGTTGC
1081CCCCAGAGAT TGGAAGCTGG AAAAATATAA CTGTGCTGTT TCTCCATTCC AATAAACTTG
1141AGACACTTCC AGAGGAAATG GGTGATATGC AAAAATTAAA AGTCATTAAT TTAAGTGATA
1201ATAGATTAAA GAATTTACCC TTTAGCTTTA CAAAGCTACA GCAATTGACA GCTATGTGGC
1261TCTCAGATAA TCAGTCCAAA CCCCTGATAC CTCTTCAAAA AGAAACTGAT TCAGAGACCC
1321AGAAAATGGT GCTTACCAAC TACATGTTCC CTCAACAGCC AAGGACTGAG GATGTTATGT
1381TTATATCAGA TAATGAAAGT TTTAACCCTT CATTGTGGGA GGAACAGAGG AAACAGCGGG
1441CTCAAGTTGC ATTTGAATGT GATGAAGACA AAGATGAAAG GGAGGCACCT CCCAGGGAGG
1501GAAATTTAAA AAGATATCCA ACACCATACC CAGATGAGCT TAAGAATATG GTCAAAACTG
1561TTCAAACCAT TGTACATAGA TTAAAAGATG AAGAGACCAA TGAAGACTCA GGAAGAGATT
1621TGAAACCACA TGAAGATCAA CAAGATATAA ATAAAGATGT GGGTGTGAAG ACCTCGGAAA
1681GTACTACTAC AGTAAAAAGC AAAGTTGGTG AAAGAGAAAA ATATATGATA GGAAACTCTG
1741TACAGAAGAT CAGTGAACCT GAAGCTGAGA TTAGTCCTGG GAGTTTACCA GTGACTGCAA
1801ATATGAAAGC CTCTGAGAAC TTGAAGCATA TTGTTAACCA TGATGATGTT TTTGAGGAAT
1861CTGAAGAACT TTCTTCTGAT GAAGAGATGA AAATGGCGGA GATGCGACCA CCATTAATTG
1921AAACCTCTAT TAACCAGCCA AAAGTCGTAG CACTTAGTAA TAACAAAAAA GATGATACAA
1981AGGAAACAGA TTCTTTATCA GATGAAGTTA CACACAATAG CAATCAGAAT AACAGCAATT
2041GTTCTTCTCC ATCTCGGATG TCTGATTCAG TTTCTCTTAA TACTGATAGT AGTCAAGACA
2101CCTCACTCTG CTCTCCAGTG AAACAAACTC ATATTGATAT TAATTCCAAA ATCAGGCAAG
2161AAGATGAAAA TTTTAACAGC CTTTTACAAA ATGGAGATAT TTTAAACAGT TCAACAGAGG
2221AAAAGTTCAA AGCTCATGAT AAAAAAGATT TTAACTTACC TGAATATGAT TTGAATGTTG
2281AAGAGCGATT AGTTCTAATT GAGAAAAGTG TTGACTCAAC AGCCACAGCT GATGACACTC
2341ACAAATTAGA TCATATCAAT ATGAATCTTA ATAAACTTAT AACTAATGAT ACATTCCAAC
2401CAGAGATCAT GGAAAGATCA AAAACACAGG ATATTGTGCT TGGAACAAGC TTTTTAAGCA
2461TTAATTCTAA AGAGGAAACT GAGCACTTGG AAAATGGAAA CAAGTATCCT AATTTGGAAT
2521CCGTAAATAA GGTAAATGGA CATTCTGAGG AAACTTCCCA GTCTCCTAAT AGGACTGAAC
2581CACATGACAG TGATTGTTCT GTTGACTTAG GTATTTCCAA AAGCACTGAA GATCTCTCCC
2641CTCAGAAAAG TGGTCCAGTT GGATCTGTTG TGAAATCTCA TAGCATAACT AATATGGAGA
2701TTGGAGGGCT AAAAATCTAT GATATTCTTA GTGATAATGG ACCTCAGCAG CCAAGTACAA
2761CCGTTAAAAT CACATCTGCT GTTGATGGAA AAAATATAGT CAGGAGCAAG TCTGCCACAC
2821TGTTGTATGA TCAACCATTG CAGGTATTTA CTGGTTCTTC CTCATCTTCT GATTTAATAT
2881CAGGAACAAA GGCAATTTTC AAGTTTGATT CAAATCATAA TCCCGAAGAG CCAAATATAA
2941TAAGAGGCCC CACAAGTGGC CCACAATCTG CACCTCAAAT ATATGGTCCT CCACAGTATA
3001ATATCCAATA CAGTAGCAGT GCTGCAGTCA AAGACACTTT GTGGCACTCC AAACAAAATC
3061CCCAAATAGA CCATGCCAGT TTTCCTCCTC AGCTCCTTCC TAGATCAGAG AGCACAGAAA
3121ATCAAAGTTA TGCTAAACAT TCTGCCAATA TGAATTTCTC TAATCATAAC AATGTTCGAG
3181CTAATACTGC ATACCATTTA CATCAGAGAC TTGGCCCAGC AAGACATGGG GAAATGTGGG
3241CCATCTCACC AAACGACCGA CTTATTCCTG CAGTAACTCG AAGTACAATC CAGCGACAAA
3301GTAGTGTGTC CTCCACAGCC TCTGTAAATC TTGGTGATCC AGGCTCTACA AGGCGGGCTC
3361AGATTCCTGA AGGAGATTAT TTATCATACA GAGAGTTCCA CTCAGCGGGA AGAACTCCTC
3421CAATGATGCC AGGATCACAG AGACCCCTTT CTGCACGAAC ATACAGCATA GATGGTCCAA
3481ATGCATCAAG ACCTCAGAGT GCTCGACCCT CTATTAATGA AATACCAGAG AGAACTATGT
3541CAGTTAGTGA TTTCAATTAT TCACGGACTA GTCCTTCAAA AAGACCAAAT GCAAGGGTTG
3601GTTCTGAGCA TTCTTTATTA GATCCTCCAG GAAAAAGTAA AGTTCCTCGT GACTGGAGAG
3661AACAAGTACT TCGACATATT GGAGCCAAAA AGTTAGAAAA GATGCCTTTG AGTAATGGAC
3721AGATGGGCCA GCCTCTCAGG CCTCCGGCAA ATTATAGTCA AATACATCAC CCCCCTCAGG
3781CATCTGTGGC AAGGCATCCC TCTAGAGAAC AACTAATTGA TTACTTGATG CTGAAAGTGG
3841CCCACCAGCC TCCATATACA CAGCCCCATT GTTCTCCTAG ACAAGGCCAT GAACTGGCAA
3901AACAAGAGAT TCGAGTGAGG GTTGAAAGGG ATCCAGAACT TGGATTTAGC ATATCAGGTG
3961GTGTCGGGGG TAGAGGAAAC CCATTCAGAC CTGATGATGA TGGTATATTT GTAACAAGGG
4021TACAACCTGA AGGACCAGCA TCAAAATTAC TGCAGCCAGG TGATAAAATT ATCCAGGCTA
4081ATGGCTACAG TTTTATAAAT ATTGAACATG GACAAGCAGT GTCCTTGCTA AAAACTTTCC
4141AGAATACAGT TGAACTCATC ATTGTACGAG AAGTTTCCTC ATTGCCAACT TTCTTGTACA
4201AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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