Transcript: Human NM_001253701.2

Homo sapiens erbb2 interacting protein (ERBIN), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
ERBIN (55914)
Length:
8409
CDS:
290..4393

Additional Resources:

NCBI RefSeq record:
NM_001253701.2
NBCI Gene record:
ERBIN (55914)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001253701.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303526 ATCCATTGCAAACCTTATTAA pLKO_005 547 CDS 100% 15.000 21.000 N ERBIN n/a
2 TRCN0000059068 GCAGCCAAGTACAACCGTTAA pLKO.1 2956 CDS 100% 10.800 15.120 N ERBIN n/a
3 TRCN0000299306 GCAGCCAAGTACAACCGTTAA pLKO_005 2956 CDS 100% 10.800 15.120 N ERBIN n/a
4 TRCN0000059070 GCACGAACATACAGCATAGAT pLKO.1 3662 CDS 100% 5.625 7.875 N ERBIN n/a
5 TRCN0000299305 GCACGAACATACAGCATAGAT pLKO_005 3662 CDS 100% 5.625 7.875 N ERBIN n/a
6 TRCN0000303527 GAACCACTGTACAGAATATAA pLKO_005 4555 3UTR 100% 15.000 12.000 N ERBIN n/a
7 TRCN0000369854 GACTCTATAGGAGGGTTAATA pLKO_005 1166 CDS 100% 15.000 12.000 N ERBIN n/a
8 TRCN0000059069 CGGGCTCAAGTTGCATTTGAA pLKO.1 1658 CDS 100% 5.625 3.938 N ERBIN n/a
9 TRCN0000059072 CGAAGTACAATCCAGCGACAA pLKO.1 3488 CDS 100% 4.050 2.835 N ERBIN n/a
10 TRCN0000059071 GCAATCAGAATAACAGCAATT pLKO.1 2229 CDS 100% 10.800 6.480 N ERBIN n/a
11 TRCN0000331636 GCAATCAGAATAACAGCAATT pLKO_005 2229 CDS 100% 10.800 6.480 N ERBIN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001253701.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08611 pDONR223 100% 99.4% 99.3% None (many diffs) n/a
2 TRCN0000472299 ATATAGGGACACAAAAATCGTTTA pLX_317 5.5% 99.4% 99.3% V5 (many diffs) n/a
3 ccsbBroad304_08611 pLX_304 12.4% 99.4% 88.4% V5 (not translated due to prior stop codon) (many diffs) n/a
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