Construct: ORF ccsbBroadEn_08618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005348.1_s300c1, BRDN0000457235
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCDHGC5 (56097)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56097 | PCDHGC5 | protocadherin gamma subfami... | NM_032407.1 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 56097 | PCDHGC5 | protocadherin gamma subfami... | NM_018929.3 | 89.3% | 86.1% | (many diffs) |
| 3 | mouse | 93708 | Pcdhgc5 | protocadherin gamma subfami... | NM_033583.3 | 78.7% | 79.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2703
- ORF length:
- 2634
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGCCCAAG ACACTCCCAC AGCTCGCTGG GAAATGGCAA GTGCTGTGCA 121 TGTTGTCCTT GTGCTGCTGG GGCTGGGTGT CTGGGCAGCT TCGTTACTCA GTGGTGGAGG 181 AGTCTGAGCC GGGGACGCTG GTGGGGAATG TTGCTCAGGA TCTGGGCTTA AAGATGACAG 241 ATCTGTTGAG CCGGCGGCTG CAACTGGGCT CTGAGGAGAA TGGGCGCTAT TTTTCCCTGA 301 GCTTGATGAG TGGTGCCCTG GCAGTGAATC AAAAGATTGA CCGAGAAAGC CTATGTGGAG 361 CCAGCACCAG CTGCCTGCTG CCAGTGCAGG TGGTGACTGA ACACCCCCTG GAGCTAATCC 421 GTGTAGAGGT AGAGATCCTG GATCTCAATG ACAACTCTCC TAGCTTTGCC ACCCCTGAGC 481 GAGAGATGCG CATCTCAGAA TCAGCAGCAT CTGGGGCACG ATTCCCACTG GACAGTGCCC 541 AGGATCCGGA TGTGGGCACC AATACTGTGA GCTTTTACAC TCTAAGCCCC AACAGCCACT 601 TCTCTCTGAA TGTGAAGACC CTAAAAGATG GGAAGCCATT CCCAGAGCTG GTGCTAGAGC 661 AGCAGCTGGA TCGTGAAGCC CAGGCAAGAC ATCAGCTGGT GCTTACTGCT GTGGATGGGG 721 GGACCCCAGC CCGCTCAGGG ACCACCCTTA TCTCTGTCAT CGTGCTGGAC ATCAATGATA 781 ATGCTCCAAC CTTCCAATCC TCAGTTCTAC GTGTGGGAAT CCCAGAGAAT GCACCCATTG 841 GTACTCTGCT GCTCCGCCTC AATGCCACTG ATCCAGACGA GGGCACCAAC GGCCAACTAG 901 ACTATTCTTT TGGAGACCAC ACATCTGAGG CAGTGCGGAA CCTCTTTGGC CTAGACCCTA 961 GCAGTGGGGC AATCCATGTG TTGGGTCCCA TAGACTTTGA GGAGTCACGT TTCTATGAAA 1021 TTCATGCAAG AGCCCGTGAC CAGGGACAGC CTGCCATGGA GGGCCACTGT GTGATTCAAG 1081 TGGATGTGGG GGATGTCAAT GACAATGCCC CAGAGGTGCT ATTGGCCTCT TTGGCCAACC 1141 CTGTCCTAGA GAGCACACCA GTGGGCACAG TAGTGGGGTT GTTTAATGTG CGAGACCGGG 1201 ACTCAGGTAG AAATGGTGAA GTGAGCCTTG ATATCTCTCC GGACCTGCCA TTTCAGATTA 1261 AGCCTTCTGA GAACCACTAC TCGCTGCTAA CCAGCCAGCC TTTGGACCGG GAGGCCACAT 1321 CCCACTATAT CATCGAGCTG CTGGCCAGCG ATGCTGGTTC ACCTTCCCTA CACAAACATC 1381 TCACCATCAG GCTCAACATT TCAGATGTCA ATGACAATGC ACCCCGCTTC AACCAGCAGC 1441 TTTACACTGC TTACATCCTA GAAAACCGGC CTCCGGGCTC CCTTCTTTGC ACTGTGGCTG 1501 CCTCAGATCC AGACACTGGG GATAATGCCC GCCTCACCTA CTCCATTGTA GGAAATCAGG 1561 TTCAGGGAGC CCCAGCCTCC TCCTTTGTGT ATGTCAACCC AGAGGATGGA CGGATCTTTG 1621 CCCAGCGTAC CTTTGACTAT GAATTGCTGC AGATGCTGCA GATTGTGGTG GGGGTTCGAG 1681 ACTCCGGCTC TCCCCCATTG CATGCCAACA CATCTCTGCA TGTGTTTGTC CTAGACGAGA 1741 ATGATAATGC CCCAGCTGTG CTGCACCCAC GGCCAGGCTG GGAACACTCA GCCCCCCAGC 1801 GTCTCCCTCG CTCTGCTCCT CCTGGCTCCT TGGTCACCAA GGTGACAGCC GTGGATGCTG 1861 ATGCAGGCCA CAATGCGTGG CTCTCCTACT CACTGTTGCC ACAGTCCACA GCCCCAGGAC 1921 TGTTCCTCGT GTCTACACAC ACTGGTGAGG TGCGCACAGC CCGGGCCTTA CTGGAGGATG 1981 ACTCTGACAC CCAGCAGGTG GTGGTCCTGG TGAGGGACAA TGGTGACCCT TCACTCTCCT 2041 CCACAGCCAC AGTGCTGCTG GTTCTGGAGG ATGAGGACCC TGAGGAAATG CCCAAATCCA 2101 GTGACTTCCT CATACACCCT CCTGAGCGTT CAGACCTTAC CCTTTACCTC ATTGTGGCTC 2161 TAGCGACCGT CAGTCTCTTA TCCCTAGTCA CCTTCACCTT TCTGTCAGCT AAGTGCCTTC 2221 AGGGAAACGC AGACGGGGAC GGGGGTGGAG GGCAGTGCTG CAGGCGCCAG GACTCACCCT 2281 CCCCGGACTT CTATAAGCAG TCCAGCCCCA ACCTGCAGGT GAGCTCGGAC GGCACGCTCA 2341 AGTACATGGA GGTGACGCTG CGGCCCACAG ACTCGCAGAG CCACTGCTAC AGGACGTGCT 2401 TTTCACCGGC CTCGGACGGC AGTGACTTCA CTTTTCTAAG ACCCCTCAGC GTTCAGCAGC 2461 CCACAGCTCT GGCGCTGGAG CCTGACGCCA TCCGGTCCCG CTCTAATACG CTGCGGGAGC 2521 GGAGCCAGGT GAGGGGCTCG GCGCCGCCCC GGGCGACCCC TGGGGGCGGC ACTGGAGAAG 2581 CCGCCCGTCC TCATAAGGGA TTGAACTTGC ATCCACTCCT CTCCGGCCGG CTTGGTCGCT 2641 GGCTGCGCTC CACCCGATTC TCGGGATCAT TGGACCGTTT GCGCGGAACC AGAGTGGCCG 2701 ATTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 2761 gcaacgaac