Construct: ORF ccsbBroadEn_08627

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012873.1_s300c1, BRDN0000457271
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHAC2 (56134)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56134 PCDHAC2 protocadherin alpha subfami... NM_031883.2 99.8% 100% 117T>A;361T>C;702C>T
2 human 56134 PCDHAC2 protocadherin alpha subfami... NM_018899.6 86.4% 84.3% (many diffs)
3 mouse 353237 Pcdhac2 protocadherin alpha subfami... NM_001003672.1 75.8% 77.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2721
ORF length:
2652
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGCAGGCG GGCACCAGAC CTGCGGCGAC AGAGCATCCA CGGCTCCGGC
121GGCCCATGCC CTGGCTGCTG CTACTGCCTC TCCTGCTGCT GTTGCTGCTG CTGCTACCTG
181GCCCAGCGGC CTCCCAGCTG CGATACTCTG TGCCAGAGGA GCAGGCACCC GGCGCGCTCG
241TGGGCAACGT GGCTCGCGCG CTGGGGCTTG AGCTGCGGCG CTTGGGGCCG GGTTGCTTGC
301GCATCAACCA TCTGGGTGCG CCCAGTCCGC GCTACCTGGA GCTGGACCTG ACGAGTGGAG
361CGCTCTTCGT CAACGAGCGC ATTGATCGGG AGGCGCTGTG TGAGCAGCGG CCTCGCTGCC
421TGCTCAGCCT GGAAGTGCTG GCGCACAACC CCGTGGCGGT GAGCGCCGTT GAGGTGGAAA
481TATTGGACAT CAACGACAAC TCACCGCGTT TCCCGCGGCC CAACTACCAG CTTCAGGTAA
541GCGAATCGGT GGCGCCTGGA GCGCGCTTTC ACATAGAGAG TGCGCAGGAC CCCGACGTGG
601GCGCCAACTC AGTACAGACC TACGAGCTCA GCCCCAGCGA GCACTTCGAG CTGGACCTTA
661AGCCCCTGCA GGAGAACAGT AAAGTGCTTG AGCTGGTGCT GCGTAAGGGC CTAGACCGGG
721AGCAGGCAGC CTTGCACCAC CTGGTTCTCA CAGCCGTGGA TGGGGGCATT CCAGCCCGCT
781CGGGTACGGC ACAGATCTCT GTGCGTGTCC TGGACACTAA CGACAACTCT CCTGCCTTTG
841ACCAGTCCAC TTATCGCGTC CAGCTACGGG AGGACTCACC CCCAGGCACA TTGGTGGTGA
901AGCTGAATGC CTCAGACCCG GATGAGGGCT CCAATGGTGA GCTCAGGTAC TCCTTGAGCA
961GCTACACGTC GGACCGGGAG AGGCAGCTCT TCAGCATAGA TGCCAGTACC GGGGAAGTGC
1021GAGTAATTGG GGGGCTGGAT TATGAGGAAG CCTCCTCCTA CCAGATCTAT GTGCAGGCGA
1081CTGACCGGGG TCCAGTGCCC ATGGCAGGTC ACTGCAAGGT GCTGGTGGAC ATCGTGGACG
1141TGAATGACAA TGCCCCAGAG GTGGTGCTCA CGGACCTGTA TAGCCCAGTG CCTGAGAATG
1201CTACACCCAA CACCATTGTG GCCGTTCTCA GTGTCAATGA CCAAGACTCA GGCCCCAACC
1261GGAAAGTGAG CCTGGGTCTG GAGGCCACAC TGCCTTTCCG ACTGAATGGC TTTGGAAACT
1321CCTATACACT GGTGGTGAGC GGCCCACTGG ACCGAGAGCG GGTGGCTGTC TACAACATCA
1381CGGTGACAGC CACAGATGGG GGAATACCGC AGCTCACATC CCTGCGTACA CTGAAGGTTG
1441AGATCTCTGA CATCAATGAC AATCCACCAA GCTTCCTGGA GGACTCCTAT TCCATCTACA
1501TACAGGAGAA CAATTTGCCA GGTGTGTTGC TCTGTACTGT GCAAGCCACA GACCCAGATG
1561AAAAGGAGAA TGCAGAGGTG ACCTACTCCC TTCTGGAGAG GGAGATTCAA GGGCTGCCAG
1621TCACCTCCTA TGTCTCCATT AACAGTGCCA GTGGCAGCCT TTATGCTGTC AACTCCTTTG
1681ACTATGAGAA GTTTCGGGAG TTCTTTGTGA CTGTGGAGGC TCAGGACAAG GGGAGCCCAC
1741CACTGAGCAG CACTGTGACT GCCAACGTAT ATGTGGTGGA CATGAATGAC CATGCCCCTC
1801ACATTCTGTA CCCTACCTCA ACCAACTCGT CAGCAGCCTT CGAGATGGTG CCTCGAACTG
1861CCCCTGCTGG CTACCTGGTC ACCAAAGTCA TAGCTATGGA CTCAGACTCT GGGCAAAATG
1921CTTGGCTTTT TTACCATCTA GCCCAGACTT CTGACCTGGA CCTCTTTAAG GTAGAGCTGC
1981ACACAGGAGA AATTAGGACT ACCAGGAAGA TGGGAGATGA GAGTGGTAGC ACTTTCAACC
2041TGACCGTGGT GGTCCGAGAT AATGGAGAGC CATCACTATC AGCCTCTGTG GCCATTACAG
2101TAGCTGTGGT GGATAGGGTT TCCAAAATCC TCCCTGACAC TCAGAGGCAT GTTAAGAGCC
2161CTCGGACATA CTCTGAAATT ACCCTTTATC TAATAATAGC ATTAAGCACA GTGTCTTTTA
2221TATTTCTTTT GACAATCATC ATTTTGAGCA TCATCAAGTG CTACCGCTAC ACTGCGTATG
2281GCACTGCATG CTGTGGAGGC TTCTGTGGAG TAAGGGAAAG GTCCCCTGCA GAACTGTACA
2341AACAAGCCAA CAACAATATT GATGCCAGGA TACCGCATGG CCTCAAAGTG CAGCCTCACT
2401TCATTGAAGT TCGAGGGAAT GGCTCCCTCA CCAAGACCTA CTGCTACAAG GCCTGTCTGA
2461CAGCAGGCTC AGGGAGTGAC ACTTTCATGT TTTACAATAC AGGGGCCCAG ACAGGACCAG
2521GGCCTTCGGG AGCCCAAGCA GCAGTGACTG ACAGCAGGAA TCTCACAGGC CAAAGTGGTC
2581AGAATGCTGG GAACCTGATT ATTCTCAAAA ATGAGGCTGT TTCTCAAAAT GAGGTGAGAC
2641AGTGGTCAGG GGGTCTTCTA CAAACTCATG CATTTGTTAC ACATCCCCCA ATATCCTGTG
2701ATTTGGCTTT ATTGAGTCAT TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2761attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.