Construct: ORF ccsbBroadEn_08660
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008634.1_s300c1, BRDN0000397067
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMARCAD1 (56916)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | NM_001128429.3 | 99.8% | 99.6% | (many diffs) |
| 2 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | NM_001128430.2 | 99.8% | 99.6% | (many diffs) |
| 3 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XM_024454154.1 | 99.8% | 99.6% | (many diffs) |
| 4 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | NM_020159.5 | 99.6% | 99.4% | (many diffs) |
| 5 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XM_017008463.2 | 99.6% | 99.4% | (many diffs) |
| 6 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XR_001741292.2 | 66.6% | (many diffs) | |
| 7 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XR_938765.2 | 65.1% | (many diffs) | |
| 8 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | NR_045644.1 | 59.3% | (many diffs) | |
| 9 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | NM_001254949.2 | 57.8% | 57.8% | (many diffs) |
| 10 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XM_017008464.2 | 49% | 49% | 0_1ins1569;270C>T;1352T>C |
| 11 | human | 56916 | SMARCAD1 | SWI/SNF-related, matrix-ass... | XM_017008465.2 | 49% | 49% | 0_1ins1569;270C>T;1352T>C |
| 12 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | NM_007958.1 | 87.9% | 91.9% | (many diffs) |
| 13 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XM_006505509.3 | 87.9% | 91.9% | (many diffs) |
| 14 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XM_006505510.2 | 87.9% | 91.9% | (many diffs) |
| 15 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | NM_001253392.1 | 71.8% | 76.2% | (many diffs) |
| 16 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XM_006505512.3 | 71.8% | 76.2% | (many diffs) |
| 17 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XM_011241205.2 | 71.8% | 76.2% | (many diffs) |
| 18 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XR_001785096.1 | 52.7% | (many diffs) | |
| 19 | mouse | 13990 | Smarcad1 | SWI/SNF-related, matrix-ass... | XM_006505513.3 | 51.3% | 55.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3150
- ORF length:
- 3084
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TCTTTTCAAC CTGGACCGTT TTCGCTTTGA GAAAAGGAAT AAGATTGAGG 121 AAGCGCCCGA AGCAACCCCT CAACCTTCCC AGCCTGGCCC TTCTTCACCA ATTTCTCTTA 181 GTGCTGAAGA GGAGAATGCT GAAGGGGAAG TTAGCAGGGC AAACACTCCT GATTCAGATA 241 TAACTGAAAA AACAGAAGAT TCTAGTGTTC CAGAAACTCC AGATAATGAA AGAAAAGCAA 301 GTATATCATA TTTCAAAAAT CAAAGAGGAA TACAGTATAT TGATTTGTCT TCTGATAGTG 361 AAGATGTCGT TTCCCCAAAT TGCTCCAATA CAGTTCAAGA GAAAACATTC AACAAAGATA 421 CAGTGATTAT AGTTTCTGAG CCATCTGAAG ATGAAGAGTC CCAAGGCCTT CCTACCATGG 481 CACGTAGAAA TGATGATATT TCAGAACTGG AAGACCTTTC GGAATTGGAA GACCTTAAAG 541 ATGCTAAACT TCAGACTTTG AAGGAACTTT TTCCACAAAG AAGTGACAAT GATTTACTTA 601 AGTTGATTGA ATCAACAAGC ACTATGGATG GAGCAATTGC TGCTGCCTTG CTGATGTTTG 661 GTGATGCAGG TGGTGGGCCC AGGAAAAGAA AATTATCTTC TTCTTCAGAG CCATATGAGG 721 AAGATGAATT TAATGATGAT CAATCTATAA AAAAGACAAG ACTGGATCAT GGAGAGGAAT 781 CAAATGAGTC TGCAGAATCT AGCAATAATT GGGAAAAGCA GGAAAGTATT GTACTGAAAT 841 TGCAAAAGGA ATTTCCCAAT TTTGATAAAC AGGAACTTAG AGAAGTACTC AAGGAACATG 901 AATGGATGTA CACAGAAGCT TTAGAATCTC TAAAAGTGTT TGCAGAAGAC CAAGATATGC 961 AATATGCATC ACAAAGTGAG GTTCCAAATG GAAAAGAAGT TTCTTCAAGA AGTCAAAATT 1021 ACCCTAAAAA TGCAACTAAA ACAAAACTAA AACAGAAATT TTCAATGAAA GCACAAAATG 1081 GCTTTAACAA GAAACGTAAA AAAAATGTTT TTAATCAAAA GAGAGTTGTT GAAGACTCTG 1141 AATATGATTC AGGTTCTGAT GTCGGTAGTT CACTAGATGA GGACTATAGT AGTGGTGAAG 1201 AAGTGATGGA GGATGGCTAT AAAGGTAAAA TTCTTCACTT CCTTCAAGAT GCTTCAATTG 1261 GTGAACTTAC TTTGATTCCT CAGTGTTCTC AGAAAAAGGC TCAGAAGATA ACAGAACTCC 1321 GGCCCTTTAA TAGTTGGGAG GCTCTGTTCA CAAAGATGTC CAAAACTAAT GGCTTATCAG 1381 AAGATTTGAT ATGGCACTGT AAAACACTGA TCCAAGAAAG AGATGTAGTT ATAAGGCTTA 1441 TGAACAAATG TGAAGACATT TCAAATAAAT TGACCAAACA AGTTACCATG CTTACTGGAA 1501 ATGGAGGTGG ATGGAACATA GAACAACCTT CCATTCTAAA CCAGAGTTTG TCACTCAAGC 1561 CCTATCAGAA GGTTGGTTTG AATTGGCTGG CATTGGTACA TAAACATGGA CTTAATGGCA 1621 TTTTGGCAGA TGAAATGGGC CTAGGAAAAA CTATTCAAGC CATTGCATTT CTGGCATACC 1681 TCTATCAGGA GGGTAATAAT GGTCCTCATT TGATCGTTGT TCCAGCTTCA ACTATAGATA 1741 ACTGGTTAAG GGAAGTTAAT TTATGGTGCC CTACTTTGAA GGTCCTCTGT TACTATGGTT 1801 CTCAAGAAGA ACGTAAACAA ATTAGATTTA ACATTCATAG TAGATATGAA GATTACAATG 1861 TAATTGTGAC CACATATAAC TGTGCGATCA GCAGTTCTGA TGATCGTAGT CTGTTTCGAC 1921 GGCTGAAACT TAATTACGCA ATTTTTGATG AGGGCCATAT GCTGAAGAAT ATGGGCTCCA 1981 TTCGCTACCA GCACCTTATG ACAATTAATG CAAATAACCG TTTGCTGCTC ACAGGCACAC 2041 CTGTACAGAA CAATCTGTTA GAACTCATGT CGCTGTTGAA TTTTGTTATG CCACACATGT 2101 TTAGTAGTAG CACCAGTGAA ATACGAAGAA TGTTTTCCTC TAAGACAAAA TCAGCAGATG 2161 AGCAAAGCAT ATATGAAAAG GAGAGAATAG CACATGCAAA ACAAATTATA AAGCCATTTA 2221 TTCTCAGAAG AGTAAAAGAA GAGGTTCTCA AGCAGTTACC CCCCAAGAAA GATCGAATTG 2281 AGTTGTGTGC AATGTCGGAG AAGCAGGAGC AACTCTATTT GGGTCTTTTC AACAGATTGA 2341 AAAAATCTAT CAATAACTTG GTCACAGAAA AAAACACAGA AATGTGCAAT GTCATGATGC 2401 AGTTGAGGAA AATGGCCAAT CATCCTTTAT TACATCGCCA ATATTACACA GCTGAAAAAC 2461 TCAAGGAAAT GTCTCAGCTT ATGCTAAAGG AACCTACACA TTGTGAGGCT AACCCTGACC 2521 TGATCTTTGA AGATATGGAA GTTATGACAG ACTTCGAACT ACATGTACTT TGTAAACAGT 2581 ACCGACACAT TAATAACTTT CAGTTAGACA TGGACTTGAT TTTAGATTCT GGAAAATTTC 2641 GAGTTTTAGG ATGCATCTTG TCTGAATTGA AACAGAAGGG TGATAGAGTT GTGTTATTTA 2701 GCCAATTTAC CATGATGCTG GATATCTTAG AGGTTCTATT AAAACATCAT CAGCATAGGT 2761 ACCTCAGATT AGATGGAAAG ACTCAGATTT CTGAAAGGAT TCATCTAATT GATGAGTTTA 2821 ATACCGATAT GGATATCTTT GTGTTTCTGC TATCAACAAA AGCTGGTGGA TTAGGAATAA 2881 ATCTGACTTC AGCAAATGTT GTTATACTTC ACGATATTGA CTGTAATCCT TATAATGACA 2941 AACAAGCAGA AGATAGATGC CATAGAGTAG GCCAGACTAA AGAAGCACTA GTTATAAAAC 3001 TAATAAGCCA AGGGACGATT GAAGAATCCA TGCTAAAAAT TAACCAACAG AAATTGAAAC 3061 TAGAACAGGA TATGACTACA GTAGATGAAG GTGATGAAGG GAGTATGCCA GCAGATATAG 3121 CCACATTACT AAAAACATCA ATGGGCCTGT GCCCAACTTT CTTGTACAAA GTtggcatta 3181 taagaaagca ttgcttatca atttgttgca acgaac