Construct: ORF ccsbBroadEn_08684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012553.1_s300c1, BRDN0000389101
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACKR3 (57007)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57007 | ACKR3 | atypical chemokine receptor 3 | NM_020311.3 | 99.8% | 99.7% | 682A>G;796C>T |
| 2 | human | 57007 | ACKR3 | atypical chemokine receptor 3 | XM_005246097.3 | 99.8% | 99.7% | 682A>G;796C>T |
| 3 | human | 57007 | ACKR3 | atypical chemokine receptor 3 | XM_005246098.3 | 99.8% | 99.7% | 682A>G;796C>T |
| 4 | human | 57007 | ACKR3 | atypical chemokine receptor 3 | XM_017004516.2 | 99.8% | 99.7% | 682A>G;796C>T |
| 5 | mouse | 12778 | Ackr3 | atypical chemokine receptor 3 | NM_001271607.1 | 88.4% | 92.5% | (many diffs) |
| 6 | mouse | 12778 | Ackr3 | atypical chemokine receptor 3 | NM_007722.4 | 88.4% | 92.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1152
- ORF length:
- 1086
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TCTGCATCTC TTCGACTACT CAGAGCCAGG GAACTTCTCG GACATCAGCT 121 GGCCATGCAA CAGCAGCGAC TGCATCGTGG TGGACACGGT GATGTGTCCC AACATGCCCA 181 ACAAAAGCGT CCTGCTCTAC ACGCTCTCCT TCATTTACAT TTTCATCTTC GTCATCGGCA 241 TGATTGCCAA CTCCGTGGTG GTCTGGGTGA ATATCCAGGC CAAGACCACA GGCTATGACA 301 CGCACTGCTA CATCTTGAAC CTGGCCATTG CCGACCTGTG GGTTGTCCTC ACCATCCCAG 361 TCTGGGTGGT CAGTCTCGTG CAGCACAACC AGTGGCCCAT GGGCGAGCTC ACGTGCAAAG 421 TCACACACCT CATCTTCTCC ATCAACCTCT TCGGCAGCAT TTTCTTCCTC ACGTGCATGA 481 GCGTGGACCG CTACCTCTCC ATCACCTACT TCACCAACAC CCCCAGCAGC AGGAAGAAGA 541 TGGTACGCCG TGTCGTCTGC ATCCTGGTGT GGCTGCTGGC CTTCTGCGTG TCTCTGCCTG 601 ACACCTACTA CCTGAAGACC GTCACGTCTG CGTCCAACAA TGAGACCTAC TGCCGGTCCT 661 TCTACCCCGA GCACAGCATC AAGGAGTGGC TGATCGGCAT GGAGCTGGTC TCCGTTGTCT 721 TGGGCTTTGC CGTTCCCTTC TCCATTGTCG CTGTCTTCTA CTTCCTGCTG GCCAGAGCCA 781 TCTCGGCGTC CAGTGACCAG GAGAAGCACA GCAGCCGGAA GATCATCTTC TCCTACGTGG 841 TGGTCTTCCT TGTCTGCTGG TTGCCCTACC ACGTGGCGGT GCTGCTGGAC ATCTTCTCCA 901 TCCTGCACTA CATCCCTTTC ACCTGCCGGC TGGAGCACGC CCTCTTCACG GCCCTGCATG 961 TCACACAGTG CCTGTCGCTG GTGCACTGCT GCGTCAACCC TGTCCTCTAC AGCTTCATCA 1021 ATCGCAACTA CAGGTACGAG CTGATGAAGG CCTTCATCTT CAAGTACTCG GCCAAAACAG 1081 GGCTCACCAA GCTCATCGAT GCCTCCAGAG TCTCAGAGAC GGAGTACTCT GCCTTGGAGC 1141 AGAGCACCAA ATGCCCAATT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1201 caatttgttg caacgaac