Transcript: Mouse NM_007722.4

Mus musculus atypical chemokine receptor 3 (Ackr3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Ackr3 (12778)
Length:
2052
CDS:
135..1223

Additional Resources:

NCBI RefSeq record:
NM_007722.4
NBCI Gene record:
Ackr3 (12778)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007722.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000221772 CTTCACTATCATTGCGATCTT pLKO.1 806 CDS 100% 4.950 6.930 N Ackr3 n/a
2 TRCN0000026660 GCCTGGCAACTACTCTGACAT pLKO.1 164 CDS 100% 4.950 3.960 N Ackr3 n/a
3 TRCN0000221774 CCCTCTCCTTCATCTACATTT pLKO.1 271 CDS 100% 13.200 9.240 N Ackr3 n/a
4 TRCN0000221773 GCAAGATCACACACCTCATTT pLKO.1 484 CDS 100% 13.200 9.240 N Ackr3 n/a
5 TRCN0000014509 CCGGAAGATCATCTTCTCCTA pLKO.1 884 CDS 100% 2.640 1.848 N ACKR3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007722.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000492025 ATGGTTTAAAAGGTCCACGTGAGA pLX_317 29.7% 88.5% 92.8% V5 (not translated due to prior stop codon) (many diffs) n/a
2 TRCN0000488481 TATTCTCGTATAACACGAGCTGTG pLX_317 29.7% 88.5% 92.8% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000489204 AGCGCCGTTGGGCGTACGATATCT pLX_317 29.5% 88.5% 92.5% V5 (many diffs) n/a
4 ccsbBroadEn_08684 pDONR223 100% 88.4% 92.5% None (many diffs) n/a
5 TRCN0000488560 TTCACACAAAAGCCTCTCCCAGTG pLX_317 29.6% 88.4% 92.5% V5 (not translated due to prior stop codon) (many diffs) n/a
6 TRCN0000488337 TCCACACTCTTTCTGTCCATTACA pLX_317 26.5% 88.4% 92.2% V5 (many diffs) n/a
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