Construct: ORF ccsbBroadEn_08710

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005669.1_s300c1, BRDN0000391856
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYRM1 (57149)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57149 LYRM1 LYR motif containing 1 NM_001128301.3 99.7% 99.1% 354T>G
2 human 57149 LYRM1 LYR motif containing 1 NM_001128302.3 99.7% 99.1% 354T>G
3 human 57149 LYRM1 LYR motif containing 1 NM_001302835.2 99.7% 99.1% 354T>G
4 human 57149 LYRM1 LYR motif containing 1 NM_001302836.2 99.7% 99.1% 354T>G
5 human 57149 LYRM1 LYR motif containing 1 NM_001369632.1 99.7% 99.1% 354T>G
6 human 57149 LYRM1 LYR motif containing 1 NM_001369633.1 99.7% 99.1% 354T>G
7 human 57149 LYRM1 LYR motif containing 1 NM_001369634.1 99.7% 99.1% 354T>G
8 human 57149 LYRM1 LYR motif containing 1 NM_001369635.1 99.7% 99.1% 354T>G
9 human 57149 LYRM1 LYR motif containing 1 NM_001369636.1 99.7% 99.1% 354T>G
10 human 57149 LYRM1 LYR motif containing 1 NM_001369637.1 99.7% 99.1% 354T>G
11 human 57149 LYRM1 LYR motif containing 1 NM_001369638.1 99.7% 99.1% 354T>G
12 human 57149 LYRM1 LYR motif containing 1 NM_001369639.1 99.7% 99.1% 354T>G
13 human 57149 LYRM1 LYR motif containing 1 NM_001369641.1 99.7% 99.1% 354T>G
14 human 57149 LYRM1 LYR motif containing 1 NM_001369642.1 99.7% 99.1% 354T>G
15 human 57149 LYRM1 LYR motif containing 1 NM_001369644.1 99.7% 99.1% 354T>G
16 human 57149 LYRM1 LYR motif containing 1 NM_001369645.1 99.7% 99.1% 354T>G
17 human 57149 LYRM1 LYR motif containing 1 NM_020424.5 99.7% 99.1% 354T>G
18 human 57149 LYRM1 LYR motif containing 1 XM_017023480.1 99.7% 99.1% 354T>G
19 human 57149 LYRM1 LYR motif containing 1 NM_001369631.1 95.8% 95.2% 160_174del;369T>G
20 human 57149 LYRM1 LYR motif containing 1 XM_011545900.2 95.8% 95.2% 160_174del;369T>G
21 human 57149 LYRM1 LYR motif containing 1 XM_011545901.2 95.8% 95.2% 160_174del;369T>G
22 human 57149 LYRM1 LYR motif containing 1 XM_011545908.2 95.8% 95.2% 160_174del;369T>G
23 human 57149 LYRM1 LYR motif containing 1 XM_017023478.1 95.8% 95.2% 160_174del;369T>G
24 human 57149 LYRM1 LYR motif containing 1 XM_017023475.1 36.6% 36.4% 1_615del;775_789del;984T>G
25 human 57149 LYRM1 LYR motif containing 1 XM_017023477.1 34.6% 26.8% (many diffs)
26 human 57149 LYRM1 LYR motif containing 1 XM_017023476.1 27.7% 27.5% 1_615del;774_775ins93;876T>G
27 human 57149 LYRM1 LYR motif containing 1 NR_126520.2 22.6% (many diffs)
28 human 57149 LYRM1 LYR motif containing 1 NR_161425.1 22.3% (many diffs)
29 human 57149 LYRM1 LYR motif containing 1 NR_161431.1 21.7% (many diffs)
30 human 57149 LYRM1 LYR motif containing 1 NR_126521.2 21.3% (many diffs)
31 human 57149 LYRM1 LYR motif containing 1 NR_126528.2 21.1% (many diffs)
32 human 57149 LYRM1 LYR motif containing 1 NR_126527.2 20.2% (many diffs)
33 human 57149 LYRM1 LYR motif containing 1 NR_161432.1 19.8% (many diffs)
34 human 57149 LYRM1 LYR motif containing 1 NR_161430.1 19.6% (many diffs)
35 human 57149 LYRM1 LYR motif containing 1 XR_950823.2 14.5% (many diffs)
36 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285959.1 87.1% 86.8% (many diffs)
37 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285960.1 87.1% 86.8% (many diffs)
38 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285961.2 87.1% 86.8% (many diffs)
39 mouse 73919 Lyrm1 LYR motif containing 1 NM_029610.3 87.1% 86.8% (many diffs)
40 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508234.3 87.1% 86.8% (many diffs)
41 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508235.3 87.1% 86.8% (many diffs)
42 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508236.3 87.1% 86.8% (many diffs)
43 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508237.3 87.1% 86.8% (many diffs)
44 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508238.3 87.1% 86.8% (many diffs)
45 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508239.3 87.1% 86.8% (many diffs)
46 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508240.3 87.1% 86.8% (many diffs)
47 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508241.3 87.1% 86.8% (many diffs)
48 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508243.3 87.1% 86.8% (many diffs)
49 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508244.3 87.1% 86.8% (many diffs)
50 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312338.1 87.1% 86.8% (many diffs)
51 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312339.1 87.1% 86.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
432
ORF length:
366
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AACGGCAACA CGACAAGAAG TCCTTGGCCT CTACCGCAGC ATTTTCAGGC
121TTGCGAGGAA ATGGCAGGCG ACATCAGGGC AGATGGAAGA CACCATCAAA GAAAAACAGT
181ACATACTAAA TGAAGCCAGA ACGCTGTTCC GGAAAAACAA AAATCTCACG GACACAGACC
241TAATTAAACA GTGTATAGAT GAATGCACAG CCAGGATTGA AATTGGACTG CATTACAAGA
301TTCCTTACCC AAGGCCAATT CATCTGCCTC CAATGGGCCT TACCCCACTC CGAGGCCGGG
361GACTTCGAAG CCAAGAGAAA CTGAGGAAAC TTTCCAAACC AGTATATCTC AGATCTCAGG
421ATGAAGTTTC CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
481caatttgttg caacgaac

Download FASTA (ORF) (Full)