Transcript: Human NR_126521.2

Homo sapiens LYR motif containing 1 (LYRM1), transcript variant 8, non-coding RNA.

Source:
NCBI, updated 2019-04-13
Taxon:
Homo sapiens (human)
Gene:
LYRM1 (57149)
Length:
1219
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_126521.2
NBCI Gene record:
LYRM1 (57149)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_126521.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064098 CCAGTATATCTCAGATCTCAT pLKO.1 294 3UTR 100% 4.950 6.930 N LYRM1 n/a
2 TRCN0000064101 GCCAATTCATCTGCCTCCAAT pLKO.1 209 3UTR 100% 4.950 3.960 N LYRM1 n/a
3 TRCN0000294360 AGTTACTGTGGCTACTATAAA pLKO_005 682 3UTR 100% 15.000 10.500 N LYRM1 n/a
4 TRCN0000294304 CTAATCTAGAGGAAAGTTTAT pLKO_005 326 3UTR 100% 13.200 9.240 N LYRM1 n/a
5 TRCN0000064100 ACTGCATTACAAGATTCCTTA pLKO.1 182 3UTR 100% 4.950 3.465 N LYRM1 n/a
6 TRCN0000064102 CAGACCTAATTAAACAGTGTA pLKO.1 130 3UTR 100% 4.950 3.465 N LYRM1 n/a
7 TRCN0000286949 CAGACCTAATTAAACAGTGTA pLKO_005 130 3UTR 100% 4.950 3.465 N LYRM1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_126521.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08710 pDONR223 100% 21.3% None (many diffs) n/a
2 ccsbBroad304_08710 pLX_304 0% 21.3% V5 (many diffs) n/a
3 TRCN0000472126 GTCGTTAATGTTATGAGCGTACCG pLX_317 100% 21.3% V5 (many diffs) n/a
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