Construct: ORF ccsbBroadEn_08771
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007467.1_s300c1, BRDN0000396794
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CYP4F11 (57834)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57834 | CYP4F11 | cytochrome P450 family 4 su... | NM_001128932.1 | 99.7% | 99.6% | (many diffs) |
| 2 | human | 57834 | CYP4F11 | cytochrome P450 family 4 su... | NM_021187.3 | 99.7% | 99.6% | (many diffs) |
| 3 | human | 8529 | CYP4F2 | cytochrome P450 family 4 su... | NM_001082.5 | 88.7% | 86.2% | (many diffs) |
| 4 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | NM_001199208.2 | 88.5% | 85.8% | (many diffs) |
| 5 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | NM_001199209.2 | 88.5% | 85.8% | (many diffs) |
| 6 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | NM_001369696.1 | 88.5% | 85.8% | (many diffs) |
| 7 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | NM_023944.4 | 87% | 83% | (many diffs) |
| 8 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | NM_000896.3 | 85% | 82.2% | (many diffs) |
| 9 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_017027172.1 | 68.5% | 57.9% | (many diffs) |
| 10 | human | 11283 | CYP4F8 | cytochrome P450 family 4 su... | XM_024451341.1 | 67.6% | 62.7% | (many diffs) |
| 11 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | XM_017026815.1 | 65.9% | 62% | (many diffs) |
| 12 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | NR_117085.2 | 64.9% | (many diffs) | |
| 13 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | XM_005259911.5 | 64.2% | 63.7% | (many diffs) |
| 14 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | XM_011528014.3 | 64.2% | 63.7% | (many diffs) |
| 15 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_006722850.3 | 63% | 61.4% | (many diffs) |
| 16 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528202.3 | 63% | 61.4% | (many diffs) |
| 17 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528208.2 | 63% | 61.4% | (many diffs) |
| 18 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528203.2 | 59% | 57.4% | (many diffs) |
| 19 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528204.2 | 59% | 57.4% | (many diffs) |
| 20 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528205.2 | 59% | 57.4% | (many diffs) |
| 21 | human | 66002 | CYP4F12 | cytochrome P450 family 4 su... | XM_011528207.2 | 56.2% | 54.9% | (many diffs) |
| 22 | human | 4051 | CYP4F3 | cytochrome P450 family 4 su... | XM_024451515.1 | 52.6% | 49.8% | (many diffs) |
| 23 | human | 388514 | CYP4F24P | cytochrome P450 family 4 su... | NR_033864.1 | 38.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1638
- ORF length:
- 1572
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GCAGCTGAGC CTGTCCTGGC TGGGCCTCGG GCCCGTGGCA GCATCCCCGT 121 GGCTGCTTCT GCTGCTGGTT GGGGGCTCCT GGCTCCTGGC CCGCGTCCTG GCCTGGACCT 181 ACACCTTCTA TGACAACTGC CGCCGCCTCC AGTGTTTTCC TCAACCCCCG AAACAGAACT 241 GGTTTTGGGG ACACCAGGGC CTGGTCACTC CCACGGAAGA GGGCATGAAG ACATTGACCC 301 AGCTGGTGAC CACATATCCC CAGGGCTTTA AGTTGTGGCT GGGTCCTACC TTCCCCCTCC 361 TCATTTTATG CCACCCTGAC ATCATCCGGC CTATCACCAG TGCCTCAGCT GCTGTCGCAC 421 CCAAGGATAT GATTTTCTAT GGCTTCCTGA AGCCCTGGCT GGGGGATGGG CTCCTGCTGA 481 GTGGTGGTGA CAAGTGGAGC CGCCACCGTC GGATGTTGAC GCCTGCCTTC CATTTCAACA 541 TCTTGAAGCC TTATATGAAG ATTTTCAACA AGAGTGTGAA CATCATGCAC GACAAGTGGC 601 AGCGCCTGGC CTCAGAGGGC AGCGCCAGAC TGGACATGTT TGAACACATC AGCCTCATGA 661 CCTTGGACAG TCTGCAGAAA TGTGTCTTCA GCTTTGAAAG CAATTGTCAG GAGAAGCCCA 721 GTGAATATAT TGCCGCCATC TTGGAGCTCA GTGCCTTTGT AGAAAAGAGA AACCAGCAGA 781 TTCTCTTGCA CACGGACTTC CTGTATTATC TCACTCCTGA TGGGCAGCGC TTCCGCAGGG 841 CCTGCCACCT GGTGCACGAC TTCACAGATG CCGTCATCCA GGAGCGGCGC CGCACCCTCC 901 CCACTCAGGG TATTGATGAT TTCCTCAAGA ACAAGGCAAA GTCCAAGACT TTAGACTTCA 961 TTGATGTGCT TCTGCTGAGC AAGGATGAAG ATGGGAAGGA ATTGTCTGAT GAGGACATAA 1021 GAGCAGAAGC TGACACCTTC ATGTTTGAGG GCCATGACAC TACAGCCAGT GGTCTCTCCT 1081 GGGTCCTATA CCACCTTGCA AAGCACCCAG AATACCAGGA ACAGTGCCGG CAAGAAGTGC 1141 AAGAGCTTCT GAAGGACCGT GAACCTATAG AGATTGAATG GGACGACCTG GCCCAGCTGC 1201 CCTTCCTGAC CATGTGCATT AAGGAGAGCC TGCGGTTGCA TCCCCCAGTC CCGGTCATCT 1261 CCCGATGTTG CACGCAGGAC TTTGTGCTCC CAGACGGCCG CGTCATCCCC AAAGGCATTG 1321 TCTGCCTCAT CAATATTATC GGGATCCATT ACAACCCAAC TGTGTGGCCA GACCCTGAGG 1381 TCTACGACCC CTTCCGTTTC AACCAAGAGA ACATCAAGGA GAGGTCACCT CTGGCTTTTA 1441 TTCCCTTCTC GGCAGGGCCC AGAAACTGCA TCGGGCAGGC GTTCGCCATG GCTGAGATGA 1501 AGGTGGTCCT GGCGCTCACG CTGCTGCACT TCCGCATCCT GCCGACCCAC ACTGAACCCC 1561 GCAGGAAACC CGAGCTGATA TTGCGCGCAG AGGGTGGACT TTGGCTGCGG GTGGAGCCCC 1621 TGGGTGCGAA CTCACAGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1681 gcttatcaat ttgttgcaac gaac