Construct: ORF ccsbBroadEn_08772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018476.1_s300c1, BRDN0000395893
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CADM3 (57863)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57863 | CADM3 | cell adhesion molecule 3 | NM_001127173.3 | 99.7% | 99.7% | 6G>T;1053T>C;1184A>C |
| 2 | human | 57863 | CADM3 | cell adhesion molecule 3 | NM_021189.5 | 91.8% | 91.8% | (many diffs) |
| 3 | human | 57863 | CADM3 | cell adhesion molecule 3 | NM_001346510.2 | 88.1% | 87.9% | (many diffs) |
| 4 | human | 57863 | CADM3 | cell adhesion molecule 3 | XM_024448760.1 | 82.5% | 82.5% | (many diffs) |
| 5 | mouse | 94332 | Cadm3 | cell adhesion molecule 3 | NM_053199.3 | 88.7% | 94.4% | (many diffs) |
| 6 | mouse | 94332 | Cadm3 | cell adhesion molecule 3 | XM_006497060.3 | 81.7% | 87% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1260
- ORF length:
- 1194
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TGCCCCAGCC GCCTCGCTCC TGCTCCTGCT CCTGCTGTTC GCCTGCTGCT 121 GGGCGCCCGG CGGGGCCAAC CTCTCCCAGG ACGACAGCCA GCCCTGGACA TCTGATGAAA 181 CAGTGGTGGC TGGTGGCACC GTGGTGCTCA AGTGCCAAGT GAAAGATCAC GAGGACTCAT 241 CCCTGCAATG GTCTAACCCT GCTCAGCAGA CTCTCTACTT TGGGGAGAAG AGAGCCCTTC 301 GAGATAATCG AATTCAGCTG GTTACCTCTA CGCCCCACGA GCTCAGCATC AGCATCAGCA 361 ATGTGGCCCT GGCAGACGAG GGCGAGTACA CCTGCTCAAT CTTCACTATG CCTGTGCGAA 421 CTGCCAAGTC CCTCGTCACT GTGCTAGGAA TTCCACAGAA GCCCATCATC ACTGGTTATA 481 AATCTTCATT ACGGGAAAAA GACACAGCCA CCCTAAACTG TCAGTCTTCT GGGAGCAAGC 541 CTGCAGCCCG GCTCACCTGG AGAAAGGGTG ACCAAGAACT CCACGGAGAA CCAACCCGCA 601 TACAGGAAGA TCCCAATGGT AAAACCTTCA CTGTCAGCAG CTCGGTGACA TTCCAGGTTA 661 CCCGGGAGGA TGATGGGGCG AGCATCGTGT GCTCTGTGAA CCATGAATCT CTAAAGGGAG 721 CTGACAGATC CACCTCTCAA CGCATTGAAG TTTTATACAC ACCAACTGCG ATGATTAGGC 781 CAGACCCTCC CCATCCTCGT GAGGGCCAGA AGCTGTTGCT ACACTGTGAG GGTCGCGGCA 841 ATCCAGTCCC CCAGCAGTAC CTATGGGAGA AGGAGGGCAG TGTGCCACCC CTGAAGATGA 901 CCCAGGAGAG TGCCCTGATC TTCCCTTTCC TCAACAAGAG TGACAGTGGC ACCTACGGCT 961 GCACAGCCAC CAGCAACATG GGCAGCTACA AGGCCTACTA CACCCTCAAT GTTAATGACC 1021 CCAGTCCGGT GCCCTCCTCC TCCAGCACCT ACCACGCCAT CATCGGTGGG ATCGTGGCTT 1081 TCATTGTCTT CCTGCTGCTC ATCATGCTCA TCTTCCTCGG CCACTACTTG ATCCGGCACA 1141 AAGGAACCTA CCTGACACAT GAGGCAAAAG GCTCCGACGA TGCTCCAGAC GCGGACACGG 1201 CCATCATCAA TGCAGAAGGC GGGCAGTCAG GAGGGGACGA CAAGAAGGCA TATTTCATCT 1261 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1321 acgaac