Construct: ORF ccsbBroadEn_08894

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015939.1_s300c1, BRDN0000393031
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHACTR4 (65979)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 65979 PHACTR4 phosphatase and actin regul... NM_001048183.3 99.9% 100% 1614C>T
2 human 65979 PHACTR4 phosphatase and actin regul... NM_001350160.2 99.9% 100% 1614C>T
3 human 65979 PHACTR4 phosphatase and actin regul... NM_001350158.2 98.8% 98.7% 17_40del;1638C>T
4 human 65979 PHACTR4 phosphatase and actin regul... NM_001350159.2 98.8% 98.7% 17_40del;1638C>T
5 human 65979 PHACTR4 phosphatase and actin regul... NM_023923.4 98.4% 98% (many diffs)
6 human 65979 PHACTR4 phosphatase and actin regul... NM_001350161.2 97.6% 97.7% 0_1ins48;1566C>T
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2172
ORF length:
2106
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGATCCATTT GAGGAAGCAG ACCAGCCCAC TACAGAGCCA GGCATGGTCC
121TGGACAGTGT GGAAGCAGGA GACACAACAC CTCCTACCAA AAGGAAGAGC AAGTTCTCAG
181GCTTTGGCAA GATCTTCAAG CCCTGGAAAT GGAGGAAAAA AAAAAGTAGT GATAAATTTA
241AAGAGACTTC AGAAGTTTTA GAACGGAAAA TATCTATGCG AAAGCCAAGA GAAGAGCTGG
301TTAAAAGAGG GGTTCTGTTG GAAGACCCTG AGCAAGGTGG TGAGGATCCA GGAAAGCCAA
361GCGATGCCAT GTTAAAGAAT GGCCATACCA CCCCCATAGG GAATGCCAGA TCATCTAGTC
421CAGTCCAAGT AGAGGAAGAG CCAGTAAGAT TAGCAAGTCT TAGGAAAGCT ATTCCAGAAG
481AGGACCTAAA GAAACGACTA GGCTCAACTG GAAGCCAGCC TAATTCTGAA GCAGAGTCTG
541TTCCTGAGAA TGTACCCAAA CCACCTTTAC TTCCTCCCAA AAGACCCTTG TCCTCTTCTC
601ATGAAGCAAG TGAAGGGCAA GCAAAGGATG CCACTTCCTC TGGCGGCACG GCAAGGTTCA
661TCATCTCCAC CTCCATCACC ACAGCACCCG CTGCCACCAC TGCTGCCACA AGCCTTGCAA
721AGACTGTTAA TCTCTCTGTC ACCCCTTCCC CAGCACCCAG GACTCTGCCT GCTGCTCCTG
781CCAGCACTAA CACTACTGCT ACCCCAAGCC TCACTCATAT GGTCCCTGCC AAGCAGCCCC
841CTATCCCTCC CCCTAAACCA GCTCACAGAA ATAGCAACCC TGTCATTGCT GAACTGTCCC
901AAGCAATAAA CAGTGGTACA TTGTTATCAA AACCGTCCCC ACCCTTACCA CCTAAGAGAG
961GCATTCCATC AACCTCAGTA CCCACCTTGG AGTCTGCTGC TGCCATCACC ACAAAAACAC
1021CAAGTGATGA AAGAGAGAAG AGCACGTGTT CTATGGGCTC GGAACTACTA CCAATGATCT
1081CACCTCGCTC TCCGTCCCCC CCACTGCCTA CTCATATACC TCCAGAGCCT CCACGCACCC
1141CTCCATTCCC TGCTAAGACT TTTCAAGTTG TGCCAGAAAT TGAGTTTCCA CCATCCTTAG
1201ATCTACACCA GGAGATTCCC CAGCAGGAAG ATCAGAAAAA GGAAGTCCCC AAGAGGATAC
1261TGGACCAGAA CTTTGGGGAG CCCCATATAC CCTCTAGGCT GCCTCCACTC CCACTGCATA
1321TTCGAATCCA GCAGGCCCTC ACCAGCCCAC TTCCCATGAC TCCTATTCTG GAGGGTTCTC
1381ACAGAGCTCA TTCGTTGCTT TTTGAAAACA GTGACAGCTT TTCTGAGGAC AGCAGTACGC
1441TGGGTCGGAC CAGGTCTCTT CCCATCACTA TTGAAATGCT AAAAGTTCCA GACGATGAAG
1501AAGAAGAGGA GCAAACCTGT CCATCCACAT TCAGTGAAGA AATGACACCT ACCTCAGTCA
1561TTCCTAAATT ACCACAGTGT CTACGGGAGG AAGAAGAGAA GGAGAGCGAC TCTGATTCAG
1621AAGGTCCCAT TCAGTACCGA GATGAAGAAG ATGAAGATGA AAGCTATCAG AGTGCTCTTG
1681CCAACAAAGT GAAGAGGAAA GACACACTGG CAATGAAGTT GAACCACAGA CCCAGTGAAC
1741CAGAGTTGAA CCTGAATTCT TGGCCTTGTA AAAGCAAGGA GGAGTGGAAT GAAATACGGC
1801ACCAGATTGG AAACACACTG ATCCGGCGAC TGAGTCAAAG ACCAACACCA GAAGAACTAG
1861AACAACGCAA TATATTGCAA CCTAAAAATG AAGCTGATCG TCAGGCAGAA AAACGAGAAA
1921TTAAACGTCG GCTCACTAGA AAGCTCAGTC AAAGGCCAAC TGTCGCTGAA CTCCTTGCCA
1981GGAAGATTCT GAGGTTTAAT GAATATGTAG AGGTAACAGA TGCTCAAGAT TATGACCGGC
2041GAGCCGACAA ACCTTGGACC AAACTGACCC CTGCTGACAA GGCTGCCATA AGAAAAGAAT
2101TAAATGAATT TAAAAGCTCC GAGATGGAGG TTCATGAAGA GAGCAAACAT TTTACACGCT
2161ACCATCGTCC ATGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2221caatttgttg caacgaac

Download FASTA (ORF) (Full)