Construct: ORF ccsbBroadEn_08914
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013836.1_s300c1, BRDN0000395266
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRRG3 (79057)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79057 | PRRG3 | proline rich and Gla domain 3 | NM_001372163.1 | 99.8% | 99.5% | 458A>G |
| 2 | human | 79057 | PRRG3 | proline rich and Gla domain 3 | NM_024082.3 | 99.8% | 99.5% | 458A>G |
| 3 | human | 79057 | PRRG3 | proline rich and Gla domain 3 | XM_011531197.2 | 99.8% | 99.5% | 458A>G |
| 4 | human | 79057 | PRRG3 | proline rich and Gla domain 3 | NM_001372165.1 | 84.2% | 83.9% | 0_1ins108;350A>G |
| 5 | human | 79057 | PRRG3 | proline rich and Gla domain 3 | NR_033262.1 | 42% | 1_390del;848A>G;1084_1644del | |
| 6 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | NM_001081135.2 | 87.1% | 93.9% | (many diffs) |
| 7 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | NM_001303028.1 | 87.1% | 93.9% | (many diffs) |
| 8 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | XM_006527924.3 | 87.1% | 93.9% | (many diffs) |
| 9 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | XM_006527925.3 | 87.1% | 93.9% | (many diffs) |
| 10 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | XM_006527926.3 | 87.1% | 93.9% | (many diffs) |
| 11 | mouse | 208748 | Prrg3 | proline rich Gla (G-carboxy... | XM_006527927.3 | 87.1% | 93.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 762
- ORF length:
- 693
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGTGTTT CTGGAGGCCA AGGATGCCCA TTCGGTCCTG AAACGATTCC 121 CTCGTGCCAA TGAGTTCCTG GAGGAGCTGC GCCAGGGCAC CATCGAGCGA GAGTGCATGG 181 AGGAGATCTG CAGCTACGAG GAGGTCAAGG AAGTGTTTGA GAACAAAGAG AAAACGATGG 241 AGTTCTGGAA AGGGTACCCA AATGCAGTCT ACTCTGTCCG AGACCCCTCG CAGAGCTCAG 301 ATGCCATGTA TGTGGTGGTA CCCCTTCTGG GGGTGGCACT GCTGATTGTC ATCGCCTTGT 361 TCATCATCTG GAGGTGCCAG CTGCAGAAAG CGACCCGTCA CCACCCCTCC TATGCTCAGA 421 ACCGGTACCT AGCCAGTCGC GCCGGGCACA CCCTCCCCCG GGTCATGGTG TACCGGGGTA 481 CTGTGCATAG CCAAGGGGAG CCTTCTGGGC ACCGAGAGGC AGCGAGCAGC CCCCAGGTGG 541 TGCTGGGGCC CAGTCGGGGG GGCAGGACCA CAGTCCGGCT AGAGAGCACC CTCTACCTCC 601 CTGAGCTCTC TCTCTCCAGA CTGTCCAGCA CCACCCCTCC CCCCTCCTAC GAGGAGGTGA 661 CTGCGCCCCA AGAGAGCAGC AGTGAGGAGG CCAGCGTGTC TTACAGTGAC CCACCCCCAA 721 AGTACGAGGA GATAGTGGCC GCCAACCCTG GCGCTGACAA GTTGCCAACT TTCTTGTACA 781 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac