Construct: ORF ccsbBroadEn_08938
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015153.1_s300c1, BRDN0000392887
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT14 (79623)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_024572.4 | 99.8% | 99.8% | 10C>G;492G>A |
| 2 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_001253827.1 | 94.7% | 92.5% | (many diffs) |
| 3 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_001329096.2 | 94.7% | 92.5% | (many diffs) |
| 4 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_001329095.2 | 93.1% | 92.2% | (many diffs) |
| 5 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_001253826.2 | 93% | 87.6% | (many diffs) |
| 6 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | XM_017004906.1 | 92% | 90.7% | (many diffs) |
| 7 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | XR_001738941.1 | 84.4% | (many diffs) | |
| 8 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | NM_001329097.2 | 78.6% | 68.9% | (many diffs) |
| 9 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | XR_001738942.1 | 77.5% | (many diffs) | |
| 10 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | XM_017004907.1 | 71.7% | 61% | (many diffs) |
| 11 | human | 79623 | GALNT14 | polypeptide N-acetylgalacto... | XR_001738943.1 | 12.4% | (many diffs) | |
| 12 | mouse | 71685 | Galnt14 | UDP-N-acetyl-alpha-D-galact... | NM_027864.2 | 86.5% | 91.3% | (many diffs) |
| 13 | mouse | 71685 | Galnt14 | UDP-N-acetyl-alpha-D-galact... | XM_006524939.3 | 66.1% | 66.5% | (many diffs) |
| 14 | mouse | 71685 | Galnt14 | UDP-N-acetyl-alpha-D-galact... | XM_006524940.3 | 52.9% | 53.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1722
- ORF length:
- 1656
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GCGCGTGACT CGTCGGCTGG TTCTGCCAGT CTTCGGGGTG CTCTGGATCA 121 CGGTGCTGCT GTTCTTCTGG GTAACCAAGA GGAAGTTGGA GGTGCCGACG GGACCTGAAG 181 TGCAGACCCC TAAGCCTTCG GACGCTGACT GGGACGACCT GTGGGACCAG TTTGATGAGC 241 GGCGGTATCT GAATGCCAAA AAGTGGCGCG TTGGTGACGA CCCCTATAAG CTGTATGCTT 301 TCAACCAGCG GGAGAGTGAG CGGATCTCCA GCAATCGGGC CATCCCGGAC ACTCGCCATC 361 TGAGATGCAC ACTGCTGGTG TATTGCACGG ACCTTCCACC CACTAGCATC ATCATCACCT 421 TCCACAACGA GGCCCGCTCC ACGCTGCTCA GGACCATCCG CAGTGTATTA AACCGCACCC 481 CTACGCATCT GATCCGGGAA ATCATATTAG TGGATGACTT CAGCAATGAC CCTGATGACT 541 GTAAACAGCT CATCAAATTG CCCAAGGTGA AATGCTTGCG CAATAATGAA CGGCAAGGTC 601 TGGTCCGGTC CCGGATTCGG GGCGCTGACA TCGCCCAGGG CACCACTCTG ACTTTCCTCG 661 ACAGCCACTG TGAGGTGAAC AGGGACTGGC TCCAGCCTCT GTTGCACAGG GTCAAAGAGG 721 ACTACACGCG GGTGGTGTGC CCTGTGATCG ATATCATTAA CCTGGACACC TTCACCTACA 781 TCGAGTCTGC CTCGGAGCTC AGAGGGGGGT TTGACTGGAG CCTCCACTTC CAGTGGGAGC 841 AGCTCTCCCC AGAGCAGAAG GCTCGGCGCC TGGACCCCAC GGAGCCCATC AGGACTCCTA 901 TCATAGCTGG AGGGCTCTTC GTGATCGACA AAGCTTGGTT TGATTACCTG GGGAAATATG 961 ATATGGACAT GGACATCTGG GGTGGGGAGA ACTTTGAAAT CTCCTTCCGA GTGTGGATGT 1021 GCGGGGGCAG CCTAGAGATC GTCCCCTGCA GCCGAGTGGG GCACGTCTTC CGGAAGAAGC 1081 ACCCCTACGT TTTCCCTGAT GGAAATGCCA ACACGTATAT AAAGAACACC AAGCGGACAG 1141 CTGAAGTGTG GATGGATGAA TACAAGCAAT ACTATTACGC TGCCCGGCCA TTCGCCCTGG 1201 AGAGGCCCTT CGGGAATGTT GAGAGCAGAT TGGACCTGAG GAAGAATCTG CGCTGCCAGA 1261 GCTTCAAGTG GTACCTGGAG AATATCTACC CTGAACTCAG CATCCCCAAG GAGTCCTCCA 1321 TCCAGAAGGG CAATATCCGA CAGAGACAGA AGTGCCTGGA ATCTCAAAGG CAGAACAACC 1381 AAGAAACCCC AAACCTAAAG TTGAGCCCCT GTGCCAAGGT CAAAGGCGAA GATGCAAAGT 1441 CCCAGGTATG GGCCTTCACA TACACCCAGC AGATCCTCCA GGAGGAGCTG TGCCTGTCAG 1501 TCATCACCTT GTTCCCTGGC GCCCCAGTGG TTCTTGTCCT TTGCAAGAAT GGAGATGACC 1561 GACAGCAATG GACCAAAACT GGTTCCCACA TCGAGCACAT AGCATCCCAC CTCTGCCTCG 1621 ATACAGATAT GTTCGGTGAT GGCACCGAGA ACGGCAAGGA AATCGTCGTC AACCCATGTG 1681 AGTCCTCACT CATGAGCCAG CACTGGGACA TGGTGAGCTC TTGCCCAACT TTCTTGTACA 1741 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac