Construct: ORF ccsbBroadEn_08999
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004680.1_s300c1, BRDN0000386635
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF606 (80095)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348022.2 | 99.9% | 99.8% | 2173G>A |
| 2 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_025027.4 | 99.9% | 99.8% | 2173G>A |
| 3 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348023.2 | 88.5% | 88.5% | 0_1ins270;1903G>A |
| 4 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348024.2 | 88.5% | 88.5% | 0_1ins270;1903G>A |
| 5 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348025.2 | 80% | 79.9% | 0_1ins474;1699G>A |
| 6 | mouse | 67370 | Zfp606 | zinc finger protein 606 | NM_026112.4 | 88.6% | 89% | (many diffs) |
| 7 | mouse | 67370 | Zfp606 | zinc finger protein 606 | XM_006540320.2 | 84.5% | 85.2% | (many diffs) |
| 8 | mouse | 67370 | Zfp606 | zinc finger protein 606 | NM_001310620.1 | 82.7% | 83.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 65
- ORF end:
- 2441
- ORF length:
- 2376
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAGT 61 TGGCATGGCA GCCATCAACC CGTGGGCCTC CTGGGGTGCC CTTACGGACC AATCTTGGGG 121 GATGACAGCT GTTGACCCAT GGGCCTCCTG GGCTCTGTGT CCTCAGTATC CTGCCTGGCA 181 CGTGGAGGGA AGCCTGGAGG AGGGGAGGAG GGCCACTGGG CTCCCAGCAG CCCAGGTTCA 241 GGAACCAGTG ACCTTCAAGG ACGTGGCCGT GGACTTCACC CAAGAAGAGT GGGGGCAGCT 301 GGACCTTGTT CAGAGGACCC TGTACCGTGA TGTGATGCTG GAGACCTATG GTCACCTGCT 361 CTCTGTGGGA AATCAGATTG CCAAGCCTGA GGTCATCTCC CTGTTGGAGC AAGGAGAAGA 421 GCCGTGGTCA GTGGAGCAGG CATGTCCTCA ACGCACTTGT CCAGAATGGG TGAGAAATCT 481 TGAAAGCAAA GCATTGATCC CAGCACAGAG CATTTTTGAG GAAGAACAAT CCCATGGCAT 541 GAAGTTGGAA AGATATATAT GGGATGATCC TTGGTTCTCC AGGTTAGAAG TTTTGGGATG 601 TAAAGACCAA TTAGAAATGT ACCACATGAA CCAGAGTACA GCTATGAGGC AGATGGTCTT 661 CATGCAAAAG CAAGTACTAT CCCAGAGAAG CTCTGAATTC TGTGGACTTG GGGCAGAGTT 721 TAGCCAGAAC TTAAACTTTG TTCCATCTCA GAGAGTTTCT CAGATAGAAC ATTTCTATAA 781 GCCTGATACA CATGCTCAAA GTTGGAGATG TGACTCAGCC ATAATGTATG CAGATAAGGT 841 TACCTGTGAA AATAATGATT ATGACAAAAC TGTTTATCAG TCCATTCAAC CTATTTACCC 901 TGCAAGAATA CAAACTGGAG ATAATCTTTT CAAATGTACT GATGCTGTTA AATCTTTCAA 961 TCATATAATA CATTTTGGTG ATCATAAAGG AATTCACACA GGAGAAAAAC TCTATGAATA 1021 TAAGGAATGC CATCAAATCT TTAACCAGAG CCCATCATTT AATGAACACC CAAGGCTTCA 1081 TGTTGGAGAA AACCAGTATA ATTACAAAGA ATATGAGAAT ATCTTTTATT TCTCATCCTT 1141 TATGGAACAT CAAAAAATTG GTACTGTAGA GAAAGCGTAT AAATACAATG AATGGGAGAA 1201 AGTCTTTGGG TATGACTCTT TCCTTACTCA ACATACAAGC ACTTACACTG CAGAGAAACC 1261 CTATGACTAC AATGAATGTG GGACGTCTTT CATCTGGAGC TCTTACCTTA TTCAACATAA 1321 GAAAACTCAT ACTGGAGAAA AACCCTATGA ATGTGATAAA TGTGGAAAAG TTTTTAGGAA 1381 TCGCTCAGCC CTTACGAAAC ATGAACGGAC TCACACTGGA ATAAAACCCT ATGAATGTAA 1441 TAAATGTGGA AAAGCCTTCA GCTGGAATTC TCATCTTATT GTACATAAGA GAATTCATAC 1501 AGGAGAAAAA CCTTATGTTT GTAATGAGTG TGGGAAATCT TTCAACTGGA ACTCTCATCT 1561 TATTGGACAT CAGAGGACTC ATACAGGAGA GAAACCTTTT GAATGTACTG AATGTGGGAA 1621 ATCATTCAGC TGGAGCTCCC ATCTTATTGC CCATATGAGA ATGCATACTG GAGAGAAACC 1681 CTTTAAATGT GATGAATGTG AAAAAGCTTT TAGGGACTAC TCAGCCCTTA GTAAACATGA 1741 AAGAACTCAT TCTGGAGCAA AACCATATAA ATGTACTGAA TGTGGAAAAT CCTTCAGCTG 1801 GAGCTCCCAT CTTATTGCCC ATCAGAGAAC TCACACGGGA GAGAAACCAT ATAACTGTCA 1861 GGAATGTGGC AAAGCATTCA GAGAACGCTC AGCCCTCACT AAACATGAGA TAATTCATTC 1921 TGGAATTAAG CCCTATGAAT GTAATAAATG TGGAAAATCC TGTAGCCAGA TGGCTCACCT 1981 TGTTAGACAT CAAAGGACTC ATACTGGAGA AAAACCCTAT GAATGCAATA AATGTGGAAA 2041 ATCCTTCAGT CAGAGCTGTC ACCTTGTTGC TCATCGGAGA ATTCACACTG GTGAGAAACC 2101 CTATAAATGT AATCAGTGTG AAAGATCCTT TAACTGTAGT TCTCACCTCA TTGCACACCG 2161 GAGAACTCAT ACTGGAGAGA AACCATACAG GTGTAATGAA TGTGGGAAAG CATTTAATGA 2221 GAGTTCATCC CTTATTATAC ACCTAAGAAA CCATACTGGA GAAAAGCCCT ACAAATGTAA 2281 TCATTGTGAA AAAGCATTTT GTAAGAATTC TTCCCTTATT ATTCATCAGA GAATGCATAG 2341 TGGAGAGAAA CGCTTTATAT GCAGTGAATG TGGAAAAGCC TTTAGTGGTC ACTCAGCCCT 2401 ACTTCAACAC CAGAGAAATC ACAGTGAAGA GAAACTGAAT TGCCCAACTT TCTTGTACAA 2461 AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac